A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
5.7
nTPM
Schmiedel:
40.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 1.6
Samples: 6
Max nTPM: 1.9
Min nTPM: 1.1
P10809_1003
1.1
P10809_1020
1.6
P10809_1039
1.9
P10809_1058
1.9
P10809_1080
1.5
P10809_1107
1.5
Intermediate monocyte nTPM: 1.0
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1004
0.4
P10809_1023
1.7
P10809_1042
0.0
P10809_1061
2.4
P10809_1081
0.6
P10809_1108
0.7
Non-classical monocyte nTPM: 1.1
Samples: 5
Max nTPM: 2.7
Min nTPM: 0.0
P10809_1005
1.2
P10809_1053
0.3
P10809_1072
0.0
P10809_1082
1.1
P10809_1109
2.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.7
Monaco sample
nTPM
Classical monocyte nTPM: 5.7
Samples: 4
Max nTPM: 9.0
Min nTPM: 3.8
RHH5313_R3680
3.8
RHH5221_R3593
5.2
RHH5250_R3622
4.8
RHH5279_R3651
9.0
Intermediate monocyte nTPM: 1.9
Samples: 4
Max nTPM: 3.1
Min nTPM: 0.7
RHH5314_R3681
0.7
RHH5222_R3594
2.8
RHH5251_R3623
1.1
RHH5280_R3652
3.1
Non-classical monocyte nTPM: 5.1
Samples: 4
Max nTPM: 9.3
Min nTPM: 0.7
RHH5315_R3682
9.3
RHH5223_R3595
4.3
RHH5252_R3624
6.1
RHH5281_R3653
0.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.8
Schmiedel sample id
TPM
Classical monocyte TPM: 40.8
Samples: 91
Max TPM: 55.9
Min TPM: 30.6
MONOCYTES_1
55.9
MONOCYTES_2
53.6
MONOCYTES_3
52.6
MONOCYTES_4
52.5
MONOCYTES_5
51.9
MONOCYTES_6
50.1
MONOCYTES_7
50.1
MONOCYTES_8
49.6
MONOCYTES_9
49.6
MONOCYTES_10
49.4
MONOCYTES_11
48.8
MONOCYTES_12
48.1
MONOCYTES_13
47.4
MONOCYTES_14
47.1
MONOCYTES_15
46.3
MONOCYTES_16
45.4
MONOCYTES_17
45.1
MONOCYTES_18
45.0
MONOCYTES_19
44.9
MONOCYTES_20
44.5
MONOCYTES_21
44.4
MONOCYTES_22
44.4
MONOCYTES_23
44.3
MONOCYTES_24
44.3
MONOCYTES_25
43.7
MONOCYTES_26
43.4
MONOCYTES_27
43.4
MONOCYTES_28
43.2
MONOCYTES_29
43.1
MONOCYTES_30
42.5
MONOCYTES_31
42.2
MONOCYTES_32
42.0
MONOCYTES_33
41.9
MONOCYTES_34
41.9
MONOCYTES_35
41.8
MONOCYTES_36
41.8
MONOCYTES_37
41.7
MONOCYTES_38
41.5
MONOCYTES_39
41.3
MONOCYTES_40
41.1
MONOCYTES_41
40.7
MONOCYTES_42
40.5
MONOCYTES_43
40.2
MONOCYTES_44
40.1
MONOCYTES_45
40.0
MONOCYTES_46
39.9
MONOCYTES_47
39.9
MONOCYTES_48
39.8
MONOCYTES_49
39.8
MONOCYTES_50
39.5
MONOCYTES_51
39.5
MONOCYTES_52
38.9
MONOCYTES_53
38.8
MONOCYTES_54
38.6
MONOCYTES_55
38.6
MONOCYTES_56
38.6
MONOCYTES_57
38.5
MONOCYTES_58
38.5
MONOCYTES_59
38.3
MONOCYTES_60
38.3
MONOCYTES_61
38.2
MONOCYTES_62
38.0
MONOCYTES_63
37.7
MONOCYTES_64
37.6
MONOCYTES_65
37.2
MONOCYTES_66
37.0
MONOCYTES_67
36.9
MONOCYTES_68
36.8
MONOCYTES_69
36.7
MONOCYTES_70
36.5
MONOCYTES_71
36.4
MONOCYTES_72
36.4
MONOCYTES_73
36.4
MONOCYTES_74
36.3
MONOCYTES_75
36.2
MONOCYTES_76
35.5
MONOCYTES_77
35.4
MONOCYTES_78
35.2
MONOCYTES_79
35.0
MONOCYTES_80
34.8
MONOCYTES_81
34.4
MONOCYTES_82
34.1
MONOCYTES_83
34.0
MONOCYTES_84
33.6
MONOCYTES_85
33.2
MONOCYTES_86
33.0
MONOCYTES_87
32.9
MONOCYTES_88
32.6
MONOCYTES_89
30.7
MONOCYTES_90
30.7
MONOCYTES_91
30.6
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Non-classical monocyte TPM: 33.8
Samples: 90
Max TPM: 46.6
Min TPM: 21.9
M2_1
46.6
M2_2
43.7
M2_3
42.4
M2_4
41.4
M2_5
40.4
M2_6
39.5
M2_7
39.0
M2_8
38.9
M2_9
38.8
M2_10
38.7
M2_11
38.6
M2_12
38.5
M2_13
38.4
M2_14
37.8
M2_15
37.7
M2_16
37.4
M2_17
37.3
M2_18
37.3
M2_19
37.1
M2_20
37.1
M2_21
36.9
M2_22
36.9
M2_23
36.8
M2_24
36.4
M2_25
36.3
M2_26
36.2
M2_27
36.1
M2_28
36.1
M2_29
36.0
M2_30
35.7
M2_31
35.6
M2_32
35.1
M2_33
35.1
M2_34
35.1
M2_35
35.0
M2_36
35.0
M2_37
34.8
M2_38
34.7
M2_39
34.7
M2_40
34.6
M2_41
34.5
M2_42
34.5
M2_43
34.3
M2_44
34.3
M2_45
34.1
M2_46
34.1
M2_47
34.0
M2_48
34.0
M2_49
33.9
M2_50
33.9
M2_51
33.8
M2_52
33.7
M2_53
33.6
M2_54
33.6
M2_55
33.5
M2_56
32.6
M2_57
32.3
M2_58
32.2
M2_59
32.2
M2_60
31.6
M2_61
31.5
M2_62
31.4
M2_63
31.3
M2_64
30.9
M2_65
30.9
M2_66
30.8
M2_67
30.6
M2_68
30.4
M2_69
30.2
M2_70
30.1
M2_71
29.9
M2_72
29.8
M2_73
29.7
M2_74
29.5
M2_75
29.4
M2_76
29.4
M2_77
29.0
M2_78
28.8
M2_79
28.5
M2_80
28.4
M2_81
28.1
M2_82
27.9
M2_83
27.9
M2_84
27.9
M2_85
27.8
M2_86
27.7
M2_87
26.4
M2_88
26.2
M2_89
25.7
M2_90
21.9
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