MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.4 nTPM
HPA Brain:153.1 nTPM
GTEx:45.4 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:57.0 nTPM
Mouse:64.6 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 153.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.5
2586 Male, age 75, left hemisphere 164.5
2219 Male, age 76, both hemispheres 139.3
2666 Male, age 74, left hemisphere 127.1
2828 Female, age 72, unknown 121.3
2019 Male, age 18, unknown 109.0
1833 Male, age 53, unknown 108.5
1830 Male, age 51, unknown 99.1
1870 Female, age 42, unknown 98.1
1827 Male, age 72, unknown 96.2
2411 Female, age 72, unknown 92.1
Dorsal raphe nucleus
nTPM: 117.8
2047 Male, age 72, unknown 132.0
2016 Female, age 72, unknown 122.2
1828 Male, age 53, unknown 116.5
2750 Male, age 76, both hemispheres 110.3
2298 Female, age 72, unknown 108.0
Inferior colliculus
nTPM: 118.6
2849 Male, age 72, unknown 141.5
1848 Female, age 42, unknown 119.9
1890 Male, age 53, unknown 114.4
2097 Female, age 72, unknown 98.5
Median raphe nucleus
nTPM: 153.1
2220 Male, age 76, midline 153.1
Periaquaductal grey, anterior
nTPM: 120.8
2502 Female, age 75, unknown 141.4
1795 Male, age 51, unknown 116.6
1947 Male, age 18, unknown 104.3
Periaquaductal grey, dorsal
nTPM: 124.2
2850 Male, age 76, both hemispheres 153.2
1840 Male, age 53, unknown 142.3
2464 Female, age 72, unknown 100.8
1831 Male, age 72, unknown 100.4
Periaquaductal grey, lateral
nTPM: 119.6
2140 Male, age 76, both hemispheres 135.2
2053 Male, age 18, unknown 125.0
2272 Male, age 74, both hemispheres 98.5
Pretectal area
nTPM: 121.4
2667 Female, age 75, unknown 147.4
1944 Female, age 72, unknown 134.8
1816 Male, age 51, unknown 131.4
1817 Female, age 42, unknown 128.1
1815 Male, age 53, unknown 124.0
2825 Male, age 18, unknown 121.8
2007 Male, age 72, unknown 119.0
2407 Male, age 75, both hemispheres 113.5
2224 Female, age 72, unknown 112.7
2273 Male, age 74, both hemispheres 101.3
2316 Male, age 76, right hemisphere 100.7
Red nucleus
nTPM: 125.6
1821 Female, age 72, unknown 144.5
1904 Male, age 53, unknown 142.9
2769 Male, age 72, unknown 139.1
2227 Male, age 72, unknown 136.1
2588 Male, age 74, left hemisphere 129.0
1954 Female, age 42, unknown 128.9
2823 Male, age 76, right hemisphere 127.3
2503 Female, age 72, unknown 125.1
1865 Male, age 51, unknown 124.4
2785 Male, age 18, unknown 106.6
2725 Female, age 75, unknown 105.9
2584 Male, age 75, left hemisphere 96.9
Substantia nigra
nTPM: 146.7
2699 Male, age 18, unknown 198.3
1916 Female, age 42, unknown 176.2
2665 Male, age 74, both hemispheres 170.4
1851 Male, age 51, unknown 164.4
2241 Male, age 72, unknown 151.8
1889 Female, age 72, unknown 134.7
2583 Male, age 75, right hemisphere 127.8
1941 Male, age 53, unknown 122.1
2409 Female, age 72, unknown 110.5
2590 Female, age 75, unknown 110.4
Superior colliculus
nTPM: 118.0
2664 Male, age 75, both hemispheres 170.1
2587 Male, age 74, left hemisphere 126.5
2668 Female, age 75, unknown 123.9
2087 Female, age 72, unknown 121.8
1839 Male, age 51, unknown 121.3
2261 Male, age 18, unknown 111.1
1796 Male, age 53, unknown 109.7
1895 Male, age 76, right hemisphere 102.4
1995 Male, age 72, unknown 97.4
1913 Female, age 42, unknown 96.0
Ventral tegmental area
nTPM: 133.3
2218 Male, age 76, both hemispheres 146.4
1915 Female, age 42, unknown 143.3
2021 Male, age 53, unknown 131.4
2410 Female, age 72, unknown 130.3
2223 Female, age 72, unknown 127.4
1942 Male, age 51, unknown 121.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.4
Samples: 183

Max nTPM: 75.8
Min nTPM: 8.2
Std nTPM: 11.7
Median nTPM: 44.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 75.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 72.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 72.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 69.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 68.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 67.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 66.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 65.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 65.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 58.5
Min nTPM: 43.0
Sample A Female 55.6
Sample B Female 45.4
Sample C Male 58.5
Sample D Male 43.0
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 69.6
Min nTPM: 38.6
Sample A Female 38.6
Sample B Female 55.8
Sample C Male 69.6
Sample D Male 64.0
Periaqueductal gray
nTPM: 46.5
Samples: 3

Max nTPM: 52.7
Min nTPM: 39.4
Sample B Female 52.7
Sample C Male 47.5
Sample D Male 39.4
Superior colliculi
nTPM: 51.6
Samples: 4

Max nTPM: 60.0
Min nTPM: 34.4
Sample A Female 52.1
Sample B Female 34.4
Sample C Male 60.0
Sample D Male 59.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.7
Samples: 4

Max nTPM: 68.2
Min nTPM: 61.4
Sample A Male 68.2
Sample B Male 61.4
Sample C Female 63.4
Sample D Female 65.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74058647 Antisense, RP_051019_03_F09, Mouse strain C57BL/6J (56 days, male) 0.4

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