BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:348.5 nTPM
HPA Brain:454.5 nTPM
GTEx:348.5 nTPM
FANTOM5:565.2 Scaled Tags Per Million
Macaque:562.8 nTPM
Mouse:423.7 nTPM
Rat:443.7 nTPM
Pig:550.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 454.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 384.1
2411 Female, age 72, unknown 489.5
1827 Male, age 72, unknown 455.0
1870 Female, age 42, unknown 427.2
2019 Male, age 18, unknown 390.5
1833 Male, age 53, unknown 374.9
2666 Male, age 74, left hemisphere 367.9
2219 Male, age 76, both hemispheres 362.4
2828 Female, age 72, unknown 347.2
1830 Male, age 51, unknown 341.5
2586 Male, age 75, left hemisphere 285.1
Dorsal raphe nucleus
nTPM: 416.7
2298 Female, age 72, unknown 542.3
2750 Male, age 76, both hemispheres 413.8
2047 Male, age 72, unknown 404.2
1828 Male, age 53, unknown 404.1
2016 Female, age 72, unknown 319.2
Inferior colliculus
nTPM: 377.1
2097 Female, age 72, unknown 444.4
1848 Female, age 42, unknown 389.4
1890 Male, age 53, unknown 338.5
2849 Male, age 72, unknown 336.2
Median raphe nucleus
nTPM: 419.1
2220 Male, age 76, midline 419.1
Periaquaductal grey, anterior
nTPM: 376.1
1947 Male, age 18, unknown 418.3
1795 Male, age 51, unknown 385.3
2502 Female, age 75, unknown 324.6
Periaquaductal grey, dorsal
nTPM: 334.7
1840 Male, age 53, unknown 350.3
1831 Male, age 72, unknown 336.9
2850 Male, age 76, both hemispheres 329.9
2464 Female, age 72, unknown 321.9
Periaquaductal grey, lateral
nTPM: 346.5
2272 Male, age 74, both hemispheres 398.2
2053 Male, age 18, unknown 356.6
2140 Male, age 76, both hemispheres 284.5
Pretectal area
nTPM: 428.9
2007 Male, age 72, unknown 509.4
1816 Male, age 51, unknown 498.6
1944 Female, age 72, unknown 496.2
1817 Female, age 42, unknown 480.7
2667 Female, age 75, unknown 454.7
2273 Male, age 74, both hemispheres 449.0
1815 Male, age 53, unknown 440.6
2224 Female, age 72, unknown 425.3
2825 Male, age 18, unknown 354.8
2407 Male, age 75, both hemispheres 312.4
2316 Male, age 76, right hemisphere 295.9
Red nucleus
nTPM: 343.4
1821 Female, age 72, unknown 494.7
1954 Female, age 42, unknown 371.6
2785 Male, age 18, unknown 360.5
2725 Female, age 75, unknown 350.7
2503 Female, age 72, unknown 336.2
1865 Male, age 51, unknown 334.3
1904 Male, age 53, unknown 328.3
2769 Male, age 72, unknown 324.5
2823 Male, age 76, right hemisphere 321.4
2227 Male, age 72, unknown 318.6
2588 Male, age 74, left hemisphere 297.4
2584 Male, age 75, left hemisphere 282.3
Substantia nigra
nTPM: 454.5
1916 Female, age 42, unknown 630.4
1941 Male, age 53, unknown 591.8
2241 Male, age 72, unknown 526.6
1889 Female, age 72, unknown 498.9
1851 Male, age 51, unknown 491.4
2409 Female, age 72, unknown 445.1
2699 Male, age 18, unknown 387.2
2583 Male, age 75, right hemisphere 358.1
2590 Female, age 75, unknown 326.3
2665 Male, age 74, both hemispheres 289.1
Superior colliculus
nTPM: 383.2
2668 Female, age 75, unknown 528.6
2587 Male, age 74, left hemisphere 435.5
1895 Male, age 76, right hemisphere 415.0
2261 Male, age 18, unknown 403.7
1796 Male, age 53, unknown 396.1
2087 Female, age 72, unknown 394.5
1839 Male, age 51, unknown 366.3
1913 Female, age 42, unknown 330.7
2664 Male, age 75, both hemispheres 286.4
1995 Male, age 72, unknown 274.9
Ventral tegmental area
nTPM: 424.0
2410 Female, age 72, unknown 528.3
1915 Female, age 42, unknown 472.6
2218 Male, age 76, both hemispheres 471.7
2223 Female, age 72, unknown 392.1
1942 Male, age 51, unknown 358.9
2021 Male, age 53, unknown 320.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 348.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 348.5
Samples: 183

Max nTPM: 1194.3
Min nTPM: 110.7
Std nTPM: 156.6
Median nTPM: 305.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1194.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 985.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 811.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 778.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 761.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 736.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 706.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 673.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 667.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 657.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 628.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 565.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 565.2
FF:10158-103A5 76 years, female 565.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 562.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 413.3
Samples: 1

Max nTPM: 413.3
Min nTPM: 413.3
Sample A 413.3
Midbrain
nTPM: 455.9
Samples: 1

Max nTPM: 455.9
Min nTPM: 455.9
Sample A 455.9
Superior colliculi
nTPM: 562.8
Samples: 1

Max nTPM: 562.8
Min nTPM: 562.8
Sample A 562.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 550.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 550.9
Samples: 3

Max nTPM: 716.1
Min nTPM: 351.4
Sample A Female 716.1
Sample B Female 351.4
Sample C Male 585.1
Midbrain
nTPM: 524.3
Samples: 3

Max nTPM: 654.1
Min nTPM: 421.3
Sample B Female 421.3
Sample C Male 654.1
Sample D Male 497.5
Periaqueductal gray
nTPM: 388.8
Samples: 3

Max nTPM: 461.9
Min nTPM: 328.6
Sample B Female 376.0
Sample C Male 461.9
Sample D Male 328.6
Superior colliculi
nTPM: 522.8
Samples: 4

Max nTPM: 676.9
Min nTPM: 321.9
Sample A Female 613.8
Sample B Female 321.9
Sample C Male 676.9
Sample D Male 478.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 423.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 423.7
Samples: 4

Max nTPM: 455.6
Min nTPM: 394.4
Sample A 394.4
Sample B 395.5
Sample C 455.6
Sample D 449.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 443.7
Rat sample Sample description nTPM
Midbrain
nTPM: 443.7
Samples: 4

Max nTPM: 465.9
Min nTPM: 408.1
Sample A 445.6
Sample A 465.9
Sample A 455.0
Sample A 408.1

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