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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • SARAF
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:243.0 nTPM
HPA Brain:438.9 nTPM
GTEx:243.0 nTPM
FANTOM5:460.1 Scaled Tags Per Million
Macaque:113.0 nTPM
Mouse:194.4 nTPM
Rat:139.4 nTPM
Pig:125.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

438.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 303.4
1827 Male, age 72, unknown 357.2
1870 Female, age 42, unknown 345.0
2411 Female, age 72, unknown 340.5
2666 Male, age 74, left hemisphere 316.4
1833 Male, age 53, unknown 302.5
2828 Female, age 72, unknown 301.9
1830 Male, age 51, unknown 283.6
2586 Male, age 75, left hemisphere 272.2
2219 Male, age 76, both hemispheres 267.1
2019 Male, age 18, unknown 247.6
Dorsal raphe nucleus
nTPM: 390.8
2298 Female, age 72, unknown 515.6
2047 Male, age 72, unknown 435.7
2750 Male, age 76, both hemispheres 344.9
1828 Male, age 53, unknown 338.4
2016 Female, age 72, unknown 319.3
Inferior colliculus
nTPM: 303.5
2097 Female, age 72, unknown 331.6
2849 Male, age 72, unknown 323.8
1848 Female, age 42, unknown 299.7
1890 Male, age 53, unknown 258.9
Median raphe nucleus
nTPM: 438.9
2220 Male, age 76, midline 438.9
Periaquaductal grey, anterior
nTPM: 360.2
1947 Male, age 18, unknown 426.0
1795 Male, age 51, unknown 350.1
2502 Female, age 75, unknown 304.4
Periaquaductal grey, dorsal
nTPM: 342.3
2850 Male, age 76, both hemispheres 423.2
1840 Male, age 53, unknown 377.9
2464 Female, age 72, unknown 297.0
1831 Male, age 72, unknown 271.1
Periaquaductal grey, lateral
nTPM: 342.8
2272 Male, age 74, both hemispheres 370.0
2053 Male, age 18, unknown 329.1
2140 Male, age 76, both hemispheres 329.1
Pretectal area
nTPM: 337.4
2224 Female, age 72, unknown 407.0
2273 Male, age 74, both hemispheres 371.9
2825 Male, age 18, unknown 367.5
1816 Male, age 51, unknown 353.2
2667 Female, age 75, unknown 351.3
1815 Male, age 53, unknown 339.9
1817 Female, age 42, unknown 336.3
1944 Female, age 72, unknown 333.2
2007 Male, age 72, unknown 330.7
2407 Male, age 75, both hemispheres 289.1
2316 Male, age 76, right hemisphere 231.8
Red nucleus
nTPM: 255.1
2725 Female, age 75, unknown 321.7
1821 Female, age 72, unknown 300.3
2584 Male, age 75, left hemisphere 269.9
1954 Female, age 42, unknown 256.4
1865 Male, age 51, unknown 255.5
2503 Female, age 72, unknown 252.3
1904 Male, age 53, unknown 248.3
2227 Male, age 72, unknown 239.0
2769 Male, age 72, unknown 237.7
2823 Male, age 76, right hemisphere 234.2
2588 Male, age 74, left hemisphere 223.9
2785 Male, age 18, unknown 222.2
Substantia nigra
nTPM: 341.1
1916 Female, age 42, unknown 403.9
2241 Male, age 72, unknown 394.9
1851 Male, age 51, unknown 366.6
1941 Male, age 53, unknown 352.0
2409 Female, age 72, unknown 346.1
1889 Female, age 72, unknown 345.0
2699 Male, age 18, unknown 327.5
2590 Female, age 75, unknown 298.4
2665 Male, age 74, both hemispheres 296.8
2583 Male, age 75, right hemisphere 280.2
Superior colliculus
nTPM: 290.5
2587 Male, age 74, left hemisphere 338.9
2261 Male, age 18, unknown 328.7
1796 Male, age 53, unknown 324.4
1839 Male, age 51, unknown 301.6
2087 Female, age 72, unknown 295.6
2668 Female, age 75, unknown 288.4
1913 Female, age 42, unknown 266.3
1895 Male, age 76, right hemisphere 263.5
2664 Male, age 75, both hemispheres 252.8
1995 Male, age 72, unknown 244.8
Ventral tegmental area
nTPM: 339.8
2410 Female, age 72, unknown 363.6
1915 Female, age 42, unknown 356.8
2218 Male, age 76, both hemispheres 345.3
2021 Male, age 53, unknown 343.4
2223 Female, age 72, unknown 324.0
1942 Male, age 51, unknown 305.4

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 243.0
Samples: 183

Max nTPM: 371.2
Min nTPM: 125.9
Std nTPM: 49.0
Median nTPM: 239.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 371.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 366.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 362.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 355.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 350.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 349.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 348.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 343.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 338.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 337.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 322.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 320.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 320.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 318.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 315.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 313.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 312.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 311.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 309.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 307.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 304.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 302.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 302.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 301.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 299.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 297.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 297.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 294.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 293.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 292.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 290.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 290.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 289.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 287.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 285.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 285.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 284.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 283.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 282.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 280.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 280.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 280.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 280.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 277.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 277.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 277.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 276.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 276.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 275.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 274.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 273.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 273.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 271.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 266.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 265.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 264.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 263.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 263.9
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 262.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 261.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 261.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 260.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 259.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 258.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 258.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 258.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 257.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 257.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 256.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 255.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 255.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 254.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 253.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 252.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 250.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 250.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 249.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 249.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 249.0
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 249.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 248.4
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 248.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 247.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 246.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 246.0
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 245.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 245.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 243.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 240.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 239.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 239.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 239.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 238.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 237.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 235.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 235.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 234.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 234.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 233.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 232.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 231.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 230.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 230.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 229.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 229.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 229.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 228.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 227.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 226.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 226.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 225.7
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 223.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 222.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 221.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 221.4
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 220.5
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 220.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 219.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 218.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 218.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 217.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 216.1
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 215.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 215.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 213.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 212.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 212.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 211.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 211.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 211.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 211.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 210.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 209.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 208.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 208.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 208.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 208.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 208.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 207.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 207.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 206.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 205.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 205.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 204.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 204.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 203.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 203.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 202.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 199.6
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 198.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 198.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 197.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 196.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 194.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 194.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 192.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 191.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 191.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 190.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 190.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 188.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 188.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 187.6
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 184.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 183.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 181.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 180.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 175.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 174.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 172.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 172.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 172.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 166.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 166.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 165.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 165.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 163.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 163.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 159.2
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 156.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 152.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 150.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 125.9
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

460.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 460.1
FF:10158-103A5 76 years, female 460.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 113.0
Samples: 1

Max nTPM: 113.0
Min nTPM: 113.0
Sample A 113.0
Midbrain
nTPM: 106.3
Samples: 1

Max nTPM: 106.3
Min nTPM: 106.3
Sample A 106.3
Superior colliculi
nTPM: 111.3
Samples: 1

Max nTPM: 111.3
Min nTPM: 111.3
Sample A 111.3

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.3
Samples: 3

Max nTPM: 135.4
Min nTPM: 105.2
Sample A Female 135.4
Sample B Female 105.2
Sample C Male 135.3
Midbrain
nTPM: 110.4
Samples: 3

Max nTPM: 116.1
Min nTPM: 103.2
Sample B Female 112.0
Sample C Male 116.1
Sample D Male 103.2
Periaqueductal gray
nTPM: 114.1
Samples: 3

Max nTPM: 133.4
Min nTPM: 100.6
Sample B Female 108.3
Sample C Male 133.4
Sample D Male 100.6
Superior colliculi
nTPM: 110.2
Samples: 4

Max nTPM: 119.3
Min nTPM: 92.4
Sample A Female 119.3
Sample B Female 115.0
Sample C Male 114.1
Sample D Male 92.4

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 194.4
Samples: 4

Max nTPM: 208.3
Min nTPM: 184.4
Sample A 195.1
Sample B 208.3
Sample C 184.4
Sample D 189.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.4
Rat sample Sample description nTPM
Midbrain
nTPM: 139.4
Samples: 4

Max nTPM: 151.5
Min nTPM: 127.4
Sample A 141.7
Sample A 151.5
Sample A 137.1
Sample A 127.4

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