BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.1 nTPM
HPA Brain:317.4 nTPM
GTEx:70.1 nTPM
FANTOM5:505.9 Scaled Tags Per Million
Macaque:117.6 nTPM
Mouse:83.3 nTPM
Rat:101.1 nTPM
Pig:181.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 317.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 249.9
2019 Male, age 18, unknown 328.8
2411 Female, age 72, unknown 301.8
1830 Male, age 51, unknown 298.2
1833 Male, age 53, unknown 282.2
1870 Female, age 42, unknown 281.9
2666 Male, age 74, left hemisphere 259.2
2828 Female, age 72, unknown 220.9
2586 Male, age 75, left hemisphere 211.6
1827 Male, age 72, unknown 189.7
2219 Male, age 76, both hemispheres 124.7
Dorsal raphe nucleus
nTPM: 185.5
2750 Male, age 76, both hemispheres 264.3
2016 Female, age 72, unknown 193.4
1828 Male, age 53, unknown 188.8
2047 Male, age 72, unknown 146.8
2298 Female, age 72, unknown 134.1
Inferior colliculus
nTPM: 172.7
1890 Male, age 53, unknown 189.2
1848 Female, age 42, unknown 177.6
2097 Female, age 72, unknown 173.8
2849 Male, age 72, unknown 150.2
Median raphe nucleus
nTPM: 160.7
2220 Male, age 76, midline 160.7
Periaquaductal grey, anterior
nTPM: 159.4
2502 Female, age 75, unknown 179.6
1947 Male, age 18, unknown 163.4
1795 Male, age 51, unknown 135.2
Periaquaductal grey, dorsal
nTPM: 142.8
2464 Female, age 72, unknown 195.5
1831 Male, age 72, unknown 152.0
2850 Male, age 76, both hemispheres 122.4
1840 Male, age 53, unknown 101.5
Periaquaductal grey, lateral
nTPM: 158.0
2272 Male, age 74, both hemispheres 175.3
2053 Male, age 18, unknown 160.7
2140 Male, age 76, both hemispheres 137.9
Pretectal area
nTPM: 185.7
1815 Male, age 53, unknown 239.4
2007 Male, age 72, unknown 215.7
1817 Female, age 42, unknown 207.4
2316 Male, age 76, right hemisphere 203.6
2407 Male, age 75, both hemispheres 202.7
2273 Male, age 74, both hemispheres 177.7
2667 Female, age 75, unknown 172.6
2825 Male, age 18, unknown 162.5
1944 Female, age 72, unknown 162.4
1816 Male, age 51, unknown 156.5
2224 Female, age 72, unknown 142.1
Red nucleus
nTPM: 317.4
1904 Male, age 53, unknown 374.7
1865 Male, age 51, unknown 367.9
1821 Female, age 72, unknown 365.6
2785 Male, age 18, unknown 343.2
2227 Male, age 72, unknown 330.9
2769 Male, age 72, unknown 328.4
2823 Male, age 76, right hemisphere 314.3
2503 Female, age 72, unknown 310.0
2588 Male, age 74, left hemisphere 300.9
1954 Female, age 42, unknown 296.5
2584 Male, age 75, left hemisphere 256.2
2725 Female, age 75, unknown 219.8
Substantia nigra
nTPM: 207.8
2583 Male, age 75, right hemisphere 263.6
2409 Female, age 72, unknown 254.6
2590 Female, age 75, unknown 235.8
1889 Female, age 72, unknown 227.3
1851 Male, age 51, unknown 222.6
2241 Male, age 72, unknown 201.1
2665 Male, age 74, both hemispheres 177.7
2699 Male, age 18, unknown 170.3
1941 Male, age 53, unknown 168.3
1916 Female, age 42, unknown 157.3
Superior colliculus
nTPM: 215.5
1913 Female, age 42, unknown 306.7
1995 Male, age 72, unknown 269.4
2587 Male, age 74, left hemisphere 258.0
2668 Female, age 75, unknown 244.5
1839 Male, age 51, unknown 204.2
1895 Male, age 76, right hemisphere 195.6
1796 Male, age 53, unknown 183.3
2261 Male, age 18, unknown 181.5
2087 Female, age 72, unknown 167.7
2664 Male, age 75, both hemispheres 144.0
Ventral tegmental area
nTPM: 216.1
2223 Female, age 72, unknown 296.5
2410 Female, age 72, unknown 270.8
2021 Male, age 53, unknown 191.8
1942 Male, age 51, unknown 189.5
2218 Male, age 76, both hemispheres 174.4
1915 Female, age 42, unknown 173.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.1
Samples: 183

Max nTPM: 220.2
Min nTPM: 28.1
Std nTPM: 31.6
Median nTPM: 62.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 220.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 195.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 179.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 166.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 147.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 143.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 135.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 131.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 129.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 128.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 128.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 505.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 505.9
FF:10158-103A5 76 years, female 505.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 117.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 117.6
Samples: 1

Max nTPM: 117.6
Min nTPM: 117.6
Sample A 117.6
Midbrain
nTPM: 68.6
Samples: 1

Max nTPM: 68.6
Min nTPM: 68.6
Sample A 68.6
Superior colliculi
nTPM: 91.3
Samples: 1

Max nTPM: 91.3
Min nTPM: 91.3
Sample A 91.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 181.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 131.5
Samples: 3

Max nTPM: 149.9
Min nTPM: 109.6
Sample A Female 149.9
Sample B Female 109.6
Sample C Male 135.0
Midbrain
nTPM: 181.9
Samples: 3

Max nTPM: 249.9
Min nTPM: 144.0
Sample B Female 144.0
Sample C Male 249.9
Sample D Male 151.9
Periaqueductal gray
nTPM: 114.4
Samples: 3

Max nTPM: 131.8
Min nTPM: 99.2
Sample B Female 131.8
Sample C Male 99.2
Sample D Male 112.3
Superior colliculi
nTPM: 165.9
Samples: 4

Max nTPM: 206.0
Min nTPM: 121.8
Sample A Female 154.4
Sample B Female 121.8
Sample C Male 206.0
Sample D Male 181.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 83.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.3
Samples: 4

Max nTPM: 93.8
Min nTPM: 71.6
Sample A 71.6
Sample B 83.1
Sample C 93.8
Sample D 84.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 101.1
Rat sample Sample description nTPM
Midbrain
nTPM: 101.1
Samples: 4

Max nTPM: 103.7
Min nTPM: 97.8
Sample A 103.7
Sample A 101.5
Sample A 101.5
Sample A 97.8

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