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RPS15A
HPA
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  • SUMMARY

  • TISSUE

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  • RPS15A
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1542.9 nTPM
HPA:763.7 nTPM
GTEx:1542.9 nTPM
FANTOM5:157.8 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047103
Endocrine cells Medium
Enterocytes Medium
Enterocytes - Microvilli Not detected
Goblet cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

763.7
overview
Male, age 65
Small intestine sample 232
nTPM: 929.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 748.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 706.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 670.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1542.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1542.9
Samples: 207

Max nTPM: 3884.9
Min nTPM: 740.5
Std nTPM: 479.9
Median nTPM: 1470.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3884.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3250.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3201.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2927.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2766.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2752.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2747.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2659.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2621.4
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2549.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2536.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2403.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2362.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2349.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2324.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 2322.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2290.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2242.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2226.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2208.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2131.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2126.5
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2099.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2047.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2025.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2025.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2013.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1976.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1924.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1909.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1904.4
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1896.2
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1892.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1881.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1878.8
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1875.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1875.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1864.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1863.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1855.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1844.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1827.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1827.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1822.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1806.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1799.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1797.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1791.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1783.6
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1780.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1766.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1766.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1747.3
GTEX-1192X-2526-SM-59868 50-59 years, male 1744.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1741.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1738.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1733.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1732.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1732.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1731.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1721.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1720.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1704.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1693.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1691.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1688.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1676.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1670.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1652.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1647.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1639.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1639.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1632.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1629.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1626.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1608.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1607.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1599.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1583.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1580.8
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1575.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1574.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1562.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1560.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1556.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1553.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1552.4
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1543.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1541.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1537.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1535.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1534.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1527.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1522.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1519.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1504.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1495.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1492.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1492.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1487.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1486.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1484.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1477.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1470.1
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1464.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1453.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1440.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1429.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1423.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1422.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1420.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1419.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1416.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1409.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1398.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1392.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1380.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1378.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1376.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1375.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1368.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1364.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1349.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1344.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1340.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1340.4
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1332.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1330.2
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1328.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1326.5
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1325.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1320.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1319.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1317.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1302.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1298.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1297.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1293.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1286.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1285.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1282.8
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1268.1
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1253.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1252.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1250.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1232.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1229.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1228.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1222.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1222.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1220.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1220.0
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1218.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1215.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1210.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1208.8
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1208.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1198.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1198.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1193.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1189.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1177.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1174.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1171.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1169.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1168.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1157.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1151.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1143.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1140.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1131.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1124.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1112.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1106.6
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1103.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1102.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1101.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1098.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1092.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1091.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1091.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1086.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1076.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1061.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1057.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1050.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1050.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1040.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1030.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 1003.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1003.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 999.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 995.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 994.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 993.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 979.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 977.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 963.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 956.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 940.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 900.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 871.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 858.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 857.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 844.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 826.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 740.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

157.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 157.8
FF:10024-101D6 15,40,85 years, mixed 157.8

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The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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