A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.0
nTPM
Monaco:
15.4
nTPM
Schmiedel:
27.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.0
HPA sample
nTPM
Classical monocyte nTPM: 6.4
Samples: 6
Max nTPM: 8.2
Min nTPM: 4.1
P10809_1003
4.1
P10809_1020
5.0
P10809_1039
7.1
P10809_1058
8.2
P10809_1080
6.6
P10809_1107
7.6
Intermediate monocyte nTPM: 6.6
Samples: 6
Max nTPM: 7.9
Min nTPM: 5.3
P10809_1004
5.3
P10809_1023
6.8
P10809_1042
7.9
P10809_1061
6.1
P10809_1081
6.6
P10809_1108
7.0
Non-classical monocyte nTPM: 7.0
Samples: 5
Max nTPM: 8.7
Min nTPM: 3.5
P10809_1005
6.4
P10809_1053
7.8
P10809_1072
3.5
P10809_1082
8.5
P10809_1109
8.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.4
Monaco sample
nTPM
Classical monocyte nTPM: 14.8
Samples: 4
Max nTPM: 16.6
Min nTPM: 13.0
RHH5313_R3680
13.4
RHH5221_R3593
13.0
RHH5250_R3622
16.1
RHH5279_R3651
16.6
Intermediate monocyte nTPM: 12.1
Samples: 4
Max nTPM: 21.1
Min nTPM: 6.5
RHH5314_R3681
10.8
RHH5222_R3594
6.5
RHH5251_R3623
21.1
RHH5280_R3652
10.0
Non-classical monocyte nTPM: 15.4
Samples: 4
Max nTPM: 21.9
Min nTPM: 8.7
RHH5315_R3682
8.7
RHH5223_R3595
17.2
RHH5252_R3624
13.7
RHH5281_R3653
21.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.4
Schmiedel sample id
TPM
Classical monocyte TPM: 22.6
Samples: 91
Max TPM: 30.4
Min TPM: 11.9
MONOCYTES_1
30.4
MONOCYTES_2
29.1
MONOCYTES_3
27.8
MONOCYTES_4
27.4
MONOCYTES_5
27.4
MONOCYTES_6
27.4
MONOCYTES_7
27.3
MONOCYTES_8
27.0
MONOCYTES_9
26.9
MONOCYTES_10
26.8
MONOCYTES_11
26.6
MONOCYTES_12
26.6
MONOCYTES_13
26.5
MONOCYTES_14
26.4
MONOCYTES_15
26.1
MONOCYTES_16
26.0
MONOCYTES_17
26.0
MONOCYTES_18
25.7
MONOCYTES_19
25.6
MONOCYTES_20
25.5
MONOCYTES_21
25.5
MONOCYTES_22
24.9
MONOCYTES_23
24.6
MONOCYTES_24
24.3
MONOCYTES_25
24.2
MONOCYTES_26
24.2
MONOCYTES_27
24.1
MONOCYTES_28
24.1
MONOCYTES_29
24.0
MONOCYTES_30
24.0
MONOCYTES_31
23.9
MONOCYTES_32
23.8
MONOCYTES_33
23.8
MONOCYTES_34
23.6
MONOCYTES_35
23.5
MONOCYTES_36
23.5
MONOCYTES_37
23.4
MONOCYTES_38
23.3
MONOCYTES_39
23.2
MONOCYTES_40
23.2
MONOCYTES_41
23.0
MONOCYTES_42
23.0
MONOCYTES_43
22.9
MONOCYTES_44
22.8
MONOCYTES_45
22.8
MONOCYTES_46
22.6
MONOCYTES_47
22.5
MONOCYTES_48
22.5
MONOCYTES_49
22.5
MONOCYTES_50
22.3
MONOCYTES_51
22.2
MONOCYTES_52
22.2
MONOCYTES_53
22.2
MONOCYTES_54
22.1
MONOCYTES_55
22.0
MONOCYTES_56
21.9
MONOCYTES_57
21.9
MONOCYTES_58
21.7
MONOCYTES_59
21.7
MONOCYTES_60
21.6
MONOCYTES_61
21.3
MONOCYTES_62
21.3
MONOCYTES_63
21.2
MONOCYTES_64
21.1
MONOCYTES_65
21.1
MONOCYTES_66
21.1
MONOCYTES_67
21.1
MONOCYTES_68
20.5
MONOCYTES_69
20.4
MONOCYTES_70
20.4
MONOCYTES_71
20.3
MONOCYTES_72
20.3
MONOCYTES_73
20.2
MONOCYTES_74
20.1
MONOCYTES_75
20.1
MONOCYTES_76
20.1
MONOCYTES_77
19.7
MONOCYTES_78
19.6
MONOCYTES_79
19.6
MONOCYTES_80
19.5
MONOCYTES_81
19.5
MONOCYTES_82
19.1
MONOCYTES_83
18.6
MONOCYTES_84
18.3
MONOCYTES_85
18.3
MONOCYTES_86
17.9
MONOCYTES_87
17.1
MONOCYTES_88
15.8
MONOCYTES_89
15.8
MONOCYTES_90
14.5
MONOCYTES_91
11.9
Show allShow less
Non-classical monocyte TPM: 27.4
Samples: 90
Max TPM: 39.2
Min TPM: 17.1
M2_1
39.2
M2_2
35.3
M2_3
33.4
M2_4
33.1
M2_5
32.9
M2_6
32.5
M2_7
32.5
M2_8
32.5
M2_9
32.4
M2_10
31.9
M2_11
31.6
M2_12
31.5
M2_13
31.5
M2_14
31.1
M2_15
31.0
M2_16
30.4
M2_17
30.3
M2_18
30.2
M2_19
30.1
M2_20
29.9
M2_21
29.9
M2_22
29.9
M2_23
29.8
M2_24
29.5
M2_25
29.3
M2_26
29.3
M2_27
29.2
M2_28
29.2
M2_29
29.1
M2_30
29.1
M2_31
29.0
M2_32
28.7
M2_33
28.6
M2_34
28.5
M2_35
28.4
M2_36
28.1
M2_37
28.1
M2_38
27.9
M2_39
27.9
M2_40
27.7
M2_41
27.6
M2_42
27.3
M2_43
27.3
M2_44
27.3
M2_45
27.2
M2_46
27.2
M2_47
27.1
M2_48
27.0
M2_49
26.9
M2_50
26.8
M2_51
26.8
M2_52
26.7
M2_53
26.6
M2_54
26.6
M2_55
26.6
M2_56
26.5
M2_57
26.4
M2_58
26.4
M2_59
26.0
M2_60
26.0
M2_61
26.0
M2_62
25.8
M2_63
25.8
M2_64
25.8
M2_65
25.5
M2_66
25.5
M2_67
25.5
M2_68
25.4
M2_69
24.9
M2_70
24.9
M2_71
24.5
M2_72
24.5
M2_73
24.4
M2_74
24.4
M2_75
24.3
M2_76
24.3
M2_77
24.3
M2_78
23.8
M2_79
23.8
M2_80
23.6
M2_81
23.5
M2_82
23.2
M2_83
23.2
M2_84
23.1
M2_85
22.5
M2_86
21.9
M2_87
21.2
M2_88
18.4
M2_89
17.7
M2_90
17.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.