HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:55.0 nTPM
HPA Brain:55.7 nTPM
GTEx:55.0 nTPM
FANTOM5:91.6 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:47.6 nTPM
Allen mouse:9.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047403
Glial cells Medium
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 55.7
Sample id Sample description nTPM
Hippocampus
nTPM: 52.9
2621 Female, age 67, right hemisphere 56.0
1911 Female, age 85, right hemisphere 54.4
2148 Female, age 91, left hemisphere 53.6
1898 Male, age 80, left hemisphere 52.5
1855 Male, age 76, left hemisphere 52.1
2529 Female, age 94, left hemisphere 48.7
Dentate gyrus
nTPM: 52.0
2530 Female, age 94, left hemisphere 60.6
2010 Male, age 76, both hemispheres 54.6
2531 Female, age 67, both hemispheres 51.8
2246 Female, age 85, both hemispheres 49.3
2528 Male, age 74, both hemispheres 48.9
1927 Female, age 91, both hemispheres 47.0
Entorhinal gyrus
nTPM: 54.2
2117 Female, age 91, right hemisphere 64.3
2613 Female, age 94, left hemisphere 57.3
2764 Male, age 80, right hemisphere 57.2
1787 Male, age 76, left hemisphere 50.6
2686 Male, age 75, right hemisphere 50.3
1938 Female, age 85, left hemisphere 45.2
Hippocampus, CA1
nTPM: 50.4
2749 Male, age 80, left hemisphere 54.4
1873 Female, age 85, both hemispheres 53.2
2045 Male, age 76, both hemispheres 49.6
2082 Female, age 91, right hemisphere 48.2
2527 Male, age 74, both hemispheres 46.8
Hippocampus, CA2
nTPM: 50.8
1963 Male, age 80, left hemisphere 57.0
1940 Female, age 85, left hemisphere 52.3
2437 Female, age 94, left hemisphere 52.3
2249 Male, age 74, both hemispheres 51.4
2113 Female, age 91, right hemisphere 48.3
1892 Male, age 76, both hemispheres 43.5
Hippocampus, CA3
nTPM: 55.7
2620 Female, age 94, left hemisphere 63.6
2436 Male, age 74, both hemispheres 59.1
1891 Female, age 85, both hemispheres 53.7
2861 Female, age 67, both hemispheres 53.3
1867 Male, age 76, both hemispheres 52.9
2137 Male, age 80, left hemisphere 51.4
Parahippocampal cortex
nTPM: 47.8
2018 Male, age 76, both hemispheres 61.2
2532 Female, age 72, left hemisphere 54.5
1990 Female, age 91, right hemisphere 47.7
2245 Female, age 91, both hemispheres 47.6
2692 Male, age 74, both hemispheres 47.2
1933 Female, age 85, both hemispheres 47.0
1850 Male, age 80, both hemispheres 45.3
2693 Female, age 94, both hemispheres 44.0
2622 Female, age 67, right hemisphere 42.5
2250 Female, age 67, right hemisphere 40.5
Perirhinal gyrus
nTPM: 43.9
2521 Female, age 94, right hemisphere 46.9
1841 Female, age 85, right hemisphere 46.7
1794 Male, age 80, right hemisphere 44.1
1847 Female, age 91, left hemisphere 42.4
2848 Male, age 76, right hemisphere 39.3
Subiculum
nTPM: 55.7
1901 Male, age 80, both hemispheres 61.2
2042 Male, age 76, both hemispheres 61.2
2729 Female, age 91, right hemisphere 56.5
2619 Male, age 74, both hemispheres 54.3
1977 Female, age 85, both hemispheres 52.5
2438 Female, age 94, left hemisphere 48.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 55.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.0
Samples: 255

Max nTPM: 208.7
Min nTPM: 31.8
Std nTPM: 17.4
Median nTPM: 51.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 208.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 116.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 110.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 105.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 100.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 93.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 92.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 91.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 90.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 88.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 87.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 91.6
FF:10153-102I9 76 years, female 98.1
FF:10169-103B7 60 years, female 85.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 26.8
Pig sample Sample description nTPM
Subiculum
nTPM: 20.0
Samples: 4

Max nTPM: 24.2
Min nTPM: 18.1
Sample A Female 24.2
Sample B Female 18.1
Sample C Male 18.6
Sample D Male 18.9
Dorsal hippocampus
nTPM: 26.9
Samples: 4

Max nTPM: 31.1
Min nTPM: 23.7
Sample A Female 31.1
Sample B Female 27.0
Sample C Male 25.6
Sample D Male 23.7
Entorhinal cortex
nTPM: 20.7
Samples: 4

Max nTPM: 22.2
Min nTPM: 19.1
Sample A Female 22.2
Sample B Female 21.4
Sample C Male 20.1
Sample D Male 19.1
Ventral hippocampus
nTPM: 24.2
Samples: 4

Max nTPM: 28.8
Min nTPM: 18.2
Sample A Female 23.2
Sample B Female 18.2
Sample C Male 26.6
Sample D Male 28.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 47.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 43.3
Samples: 4

Max nTPM: 44.4
Min nTPM: 41.9
Sample A Male 44.2
Sample B Male 44.4
Sample C Female 41.9
Sample D Female 42.7
Hippocampal formation
nTPM: 47.7
Samples: 4

Max nTPM: 53.1
Min nTPM: 42.7
Sample A Male 42.7
Sample B Male 47.1
Sample C Female 53.1
Sample D Female 47.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.8
68844492 Antisense, RP_050222_01_G08, Mouse strain C57BL/6J (56 days, male) 9.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo