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  • FADS2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:62.5 nTPM
HPA Brain:222.1 nTPM
GTEx:62.5 nTPM
FANTOM5:143.2 Scaled Tags Per Million
Pig:326.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 222.1
2565 Male, age 75, midline 276.9
1981 Female, age 72, midline 240.2
2048 Male, age 55, midline 214.4
2816 Male, age 47, midline 193.4
2194 Female, age 79, both hemispheres 185.6
Cervical spinal cord, dorsal horn
nTPM: 188.8
2721 Male, age 90, both hemispheres 240.1
2173 Female, age 72, unknown 218.6
1877 Male, age 55, unknown 183.1
2069 Male, age 47, both hemispheres 166.5
2297 Male, age 75, both hemispheres 165.8
2296 Male, age 66, both hemispheres 158.7
Cervical spinal cord, ventral horn
nTPM: 217.6
2295 Male, age 66, both hemispheres 272.4
2809 Male, age 90, both hemispheres 270.4
2480 Male, age 75, both hemispheres 225.3
2098 Female, age 72, unknown 212.1
2068 Male, age 55, unknown 172.1
2820 Female, age 79, both hemispheres 153.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 62.5
Samples: 204

Max nTPM: 135.8
Min nTPM: 24.3
Std nTPM: 20.4
Median nTPM: 60.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 135.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 131.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 116.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 116.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 115.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 110.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 108.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 102.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 99.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 98.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 98.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 97.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 97.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 96.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 96.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 95.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 95.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 94.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 91.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 90.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 89.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 89.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 88.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 88.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 87.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 87.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 86.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 85.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 84.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 84.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 83.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 83.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 82.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 81.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 80.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 80.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 79.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 78.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 78.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 76.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 76.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 76.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 76.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 76.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 75.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 75.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 74.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 74.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 73.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 73.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 73.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 73.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 71.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 71.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 71.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 70.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 70.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 70.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 69.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 69.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 69.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 67.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 67.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 67.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 67.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 67.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 67.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 67.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 67.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 67.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 66.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 66.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 66.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 66.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 66.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 66.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 65.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 65.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 65.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 64.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 64.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 63.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 63.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 63.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 63.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 63.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 63.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 63.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 62.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 62.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 62.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 62.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 62.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 62.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 61.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 61.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 61.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 61.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 60.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 60.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 60.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 59.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 59.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 58.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 58.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 58.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 58.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 58.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 57.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 57.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 56.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 56.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 56.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 56.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 56.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 55.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 55.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 55.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 55.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 54.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 54.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 53.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 53.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 53.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 53.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 53.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 53.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 52.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 52.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 52.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 52.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 52.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 51.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 51.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 51.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 50.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 50.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 50.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 50.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 50.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 50.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 49.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 49.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 49.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 48.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 48.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 48.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 48.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 48.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 47.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 47.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 47.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 46.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 46.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 46.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 45.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 45.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 45.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 45.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 44.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 43.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 43.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 43.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 43.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 42.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 42.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 42.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 42.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 42.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 41.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 41.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 41.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 41.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 40.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 40.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 40.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 40.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 39.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 39.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 38.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 35.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 35.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 35.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 34.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 34.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 33.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 33.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 33.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 32.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 31.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 30.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 29.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 29.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 29.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 29.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 28.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 28.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 24.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 143.2
FF:10181-103D1 60 years, female 196.9
FF:10159-103A6 76 years, female 89.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

326.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 235.4
Samples: 4

Max nTPM: 258.5
Min nTPM: 209.2
Sample A Female 209.2
Sample B Female 258.5
Sample C Male 226.8
Sample D Male 246.9
Ventral spinal cord
nTPM: 326.7
Samples: 4

Max nTPM: 365.7
Min nTPM: 308.0
Sample A Female 315.5
Sample B Female 365.7
Sample C Male 317.6
Sample D Male 308.0

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