A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.2
nTPM
Monaco:
85.8
nTPM
Schmiedel:
42.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.2
HPA sample
nTPM
Classical monocyte nTPM: 9.7
Samples: 6
Max nTPM: 11.3
Min nTPM: 8.3
P10809_1003
8.3
P10809_1020
10.3
P10809_1039
10.7
P10809_1058
8.9
P10809_1080
11.3
P10809_1107
8.8
Intermediate monocyte nTPM: 19.9
Samples: 6
Max nTPM: 23.6
Min nTPM: 15.8
P10809_1004
20.7
P10809_1023
21.0
P10809_1042
23.6
P10809_1061
15.8
P10809_1081
18.3
P10809_1108
20.0
Non-classical monocyte nTPM: 21.2
Samples: 5
Max nTPM: 22.3
Min nTPM: 19.9
P10809_1005
21.1
P10809_1053
19.9
P10809_1072
21.7
P10809_1082
20.9
P10809_1109
22.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.8
Monaco sample
nTPM
Classical monocyte nTPM: 51.1
Samples: 4
Max nTPM: 77.9
Min nTPM: 37.9
RHH5313_R3680
45.1
RHH5221_R3593
77.9
RHH5250_R3622
43.6
RHH5279_R3651
37.9
Intermediate monocyte nTPM: 85.8
Samples: 4
Max nTPM: 111.7
Min nTPM: 73.6
RHH5314_R3681
73.6
RHH5222_R3594
111.7
RHH5251_R3623
77.0
RHH5280_R3652
80.8
Non-classical monocyte nTPM: 79.2
Samples: 4
Max nTPM: 94.3
Min nTPM: 60.9
RHH5315_R3682
75.8
RHH5223_R3595
94.3
RHH5252_R3624
60.9
RHH5281_R3653
85.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
Schmiedel sample id
TPM
Classical monocyte TPM: 12.6
Samples: 91
Max TPM: 23.9
Min TPM: 5.7
MONOCYTES_1
23.9
MONOCYTES_2
18.5
MONOCYTES_3
18.4
MONOCYTES_4
18.3
MONOCYTES_5
18.0
MONOCYTES_6
17.9
MONOCYTES_7
17.5
MONOCYTES_8
17.3
MONOCYTES_9
17.3
MONOCYTES_10
17.2
MONOCYTES_11
16.9
MONOCYTES_12
16.6
MONOCYTES_13
16.3
MONOCYTES_14
16.0
MONOCYTES_15
15.9
MONOCYTES_16
15.6
MONOCYTES_17
15.5
MONOCYTES_18
15.3
MONOCYTES_19
15.2
MONOCYTES_20
15.1
MONOCYTES_21
14.9
MONOCYTES_22
14.8
MONOCYTES_23
14.6
MONOCYTES_24
14.4
MONOCYTES_25
14.3
MONOCYTES_26
14.0
MONOCYTES_27
13.9
MONOCYTES_28
13.6
MONOCYTES_29
13.5
MONOCYTES_30
13.4
MONOCYTES_31
13.2
MONOCYTES_32
13.2
MONOCYTES_33
13.0
MONOCYTES_34
13.0
MONOCYTES_35
12.9
MONOCYTES_36
12.9
MONOCYTES_37
12.8
MONOCYTES_38
12.7
MONOCYTES_39
12.6
MONOCYTES_40
12.6
MONOCYTES_41
12.6
MONOCYTES_42
12.5
MONOCYTES_43
12.3
MONOCYTES_44
12.2
MONOCYTES_45
12.2
MONOCYTES_46
12.0
MONOCYTES_47
11.8
MONOCYTES_48
11.8
MONOCYTES_49
11.8
MONOCYTES_50
11.8
MONOCYTES_51
11.8
MONOCYTES_52
11.7
MONOCYTES_53
11.7
MONOCYTES_54
11.6
MONOCYTES_55
11.6
MONOCYTES_56
11.5
MONOCYTES_57
11.4
MONOCYTES_58
11.4
MONOCYTES_59
11.3
MONOCYTES_60
11.3
MONOCYTES_61
11.2
MONOCYTES_62
11.1
MONOCYTES_63
11.0
MONOCYTES_64
10.9
MONOCYTES_65
10.8
MONOCYTES_66
10.8
MONOCYTES_67
10.8
MONOCYTES_68
10.7
MONOCYTES_69
10.7
MONOCYTES_70
10.5
MONOCYTES_71
10.5
MONOCYTES_72
10.5
MONOCYTES_73
10.3
MONOCYTES_74
10.3
MONOCYTES_75
10.2
MONOCYTES_76
10.1
MONOCYTES_77
10.0
MONOCYTES_78
9.9
MONOCYTES_79
9.7
MONOCYTES_80
9.6
MONOCYTES_81
9.3
MONOCYTES_82
9.2
MONOCYTES_83
9.0
MONOCYTES_84
8.9
MONOCYTES_85
8.9
MONOCYTES_86
8.8
MONOCYTES_87
8.6
MONOCYTES_88
8.1
MONOCYTES_89
7.5
MONOCYTES_90
7.4
MONOCYTES_91
5.7
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Non-classical monocyte TPM: 42.8
Samples: 90
Max TPM: 64.3
Min TPM: 14.2
M2_1
64.3
M2_2
64.1
M2_3
62.7
M2_4
62.4
M2_5
62.0
M2_6
60.5
M2_7
58.8
M2_8
57.3
M2_9
56.6
M2_10
56.3
M2_11
52.5
M2_12
51.3
M2_13
50.6
M2_14
49.7
M2_15
48.3
M2_16
47.6
M2_17
47.4
M2_18
47.0
M2_19
47.0
M2_20
46.9
M2_21
46.5
M2_22
46.1
M2_23
46.1
M2_24
45.9
M2_25
45.8
M2_26
45.6
M2_27
45.6
M2_28
45.1
M2_29
44.8
M2_30
44.7
M2_31
44.5
M2_32
44.4
M2_33
44.3
M2_34
44.2
M2_35
44.2
M2_36
43.7
M2_37
43.3
M2_38
42.8
M2_39
42.5
M2_40
42.2
M2_41
41.9
M2_42
41.7
M2_43
41.5
M2_44
41.5
M2_45
41.3
M2_46
41.3
M2_47
41.0
M2_48
41.0
M2_49
40.9
M2_50
40.9
M2_51
40.8
M2_52
40.8
M2_53
40.6
M2_54
40.5
M2_55
40.4
M2_56
40.2
M2_57
40.0
M2_58
39.9
M2_59
39.4
M2_60
39.3
M2_61
39.2
M2_62
39.2
M2_63
39.1
M2_64
38.9
M2_65
38.9
M2_66
38.4
M2_67
37.9
M2_68
37.7
M2_69
37.5
M2_70
37.3
M2_71
37.2
M2_72
36.9
M2_73
36.7
M2_74
36.7
M2_75
35.7
M2_76
35.6
M2_77
35.4
M2_78
35.1
M2_79
34.9
M2_80
34.7
M2_81
34.5
M2_82
34.5
M2_83
33.0
M2_84
32.3
M2_85
32.2
M2_86
32.2
M2_87
31.4
M2_88
31.1
M2_89
30.0
M2_90
14.2
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