A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
18.2
nTPM
Schmiedel:
22.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
Classical monocyte nTPM: 3.8
Samples: 6
Max nTPM: 4.5
Min nTPM: 3.4
P10809_1003
3.7
P10809_1020
4.5
P10809_1039
4.1
P10809_1058
3.9
P10809_1080
3.5
P10809_1107
3.4
Intermediate monocyte nTPM: 5.8
Samples: 6
Max nTPM: 7.1
Min nTPM: 4.5
P10809_1004
6.7
P10809_1023
7.1
P10809_1042
6.9
P10809_1061
4.5
P10809_1081
5.0
P10809_1108
4.5
Non-classical monocyte nTPM: 4.8
Samples: 5
Max nTPM: 7.8
Min nTPM: 0.2
P10809_1005
4.4
P10809_1053
7.8
P10809_1072
0.2
P10809_1082
4.2
P10809_1109
7.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.2
Monaco sample
nTPM
Classical monocyte nTPM: 15.1
Samples: 4
Max nTPM: 19.3
Min nTPM: 9.7
RHH5313_R3680
17.3
RHH5221_R3593
19.3
RHH5250_R3622
9.7
RHH5279_R3651
14.3
Intermediate monocyte nTPM: 15.1
Samples: 4
Max nTPM: 17.8
Min nTPM: 11.4
RHH5314_R3681
11.4
RHH5222_R3594
17.0
RHH5251_R3623
14.2
RHH5280_R3652
17.8
Non-classical monocyte nTPM: 18.2
Samples: 4
Max nTPM: 21.0
Min nTPM: 15.3
RHH5315_R3682
18.1
RHH5223_R3595
21.0
RHH5252_R3624
18.4
RHH5281_R3653
15.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.1
Schmiedel sample id
TPM
Classical monocyte TPM: 14.7
Samples: 91
Max TPM: 19.7
Min TPM: 9.7
MONOCYTES_1
19.7
MONOCYTES_2
19.0
MONOCYTES_3
18.9
MONOCYTES_4
18.5
MONOCYTES_5
18.1
MONOCYTES_6
18.0
MONOCYTES_7
17.8
MONOCYTES_8
17.6
MONOCYTES_9
17.0
MONOCYTES_10
16.8
MONOCYTES_11
16.7
MONOCYTES_12
16.7
MONOCYTES_13
16.7
MONOCYTES_14
16.4
MONOCYTES_15
16.4
MONOCYTES_16
16.4
MONOCYTES_17
16.3
MONOCYTES_18
16.1
MONOCYTES_19
16.0
MONOCYTES_20
15.9
MONOCYTES_21
15.9
MONOCYTES_22
15.9
MONOCYTES_23
15.9
MONOCYTES_24
15.9
MONOCYTES_25
15.8
MONOCYTES_26
15.8
MONOCYTES_27
15.8
MONOCYTES_28
15.6
MONOCYTES_29
15.6
MONOCYTES_30
15.6
MONOCYTES_31
15.4
MONOCYTES_32
15.4
MONOCYTES_33
15.4
MONOCYTES_34
15.3
MONOCYTES_35
15.3
MONOCYTES_36
15.3
MONOCYTES_37
15.3
MONOCYTES_38
15.2
MONOCYTES_39
14.9
MONOCYTES_40
14.8
MONOCYTES_41
14.8
MONOCYTES_42
14.7
MONOCYTES_43
14.7
MONOCYTES_44
14.6
MONOCYTES_45
14.5
MONOCYTES_46
14.5
MONOCYTES_47
14.4
MONOCYTES_48
14.4
MONOCYTES_49
14.3
MONOCYTES_50
14.3
MONOCYTES_51
14.3
MONOCYTES_52
14.2
MONOCYTES_53
14.2
MONOCYTES_54
14.2
MONOCYTES_55
14.0
MONOCYTES_56
14.0
MONOCYTES_57
13.9
MONOCYTES_58
13.9
MONOCYTES_59
13.9
MONOCYTES_60
13.9
MONOCYTES_61
13.8
MONOCYTES_62
13.7
MONOCYTES_63
13.7
MONOCYTES_64
13.5
MONOCYTES_65
13.5
MONOCYTES_66
13.4
MONOCYTES_67
13.4
MONOCYTES_68
13.4
MONOCYTES_69
13.4
MONOCYTES_70
13.4
MONOCYTES_71
13.4
MONOCYTES_72
13.1
MONOCYTES_73
13.0
MONOCYTES_74
12.9
MONOCYTES_75
12.9
MONOCYTES_76
12.9
MONOCYTES_77
12.9
MONOCYTES_78
12.8
MONOCYTES_79
12.8
MONOCYTES_80
12.8
MONOCYTES_81
12.7
MONOCYTES_82
12.7
MONOCYTES_83
12.4
MONOCYTES_84
12.3
MONOCYTES_85
12.3
MONOCYTES_86
11.8
MONOCYTES_87
11.3
MONOCYTES_88
11.3
MONOCYTES_89
11.2
MONOCYTES_90
10.3
MONOCYTES_91
9.7
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Non-classical monocyte TPM: 22.1
Samples: 90
Max TPM: 33.4
Min TPM: 16.4
M2_1
33.4
M2_2
33.3
M2_3
32.5
M2_4
29.5
M2_5
28.7
M2_6
28.4
M2_7
28.4
M2_8
27.9
M2_9
27.4
M2_10
26.6
M2_11
26.5
M2_12
26.5
M2_13
25.8
M2_14
25.0
M2_15
24.8
M2_16
24.5
M2_17
24.4
M2_18
24.3
M2_19
24.2
M2_20
24.2
M2_21
24.2
M2_22
24.1
M2_23
24.1
M2_24
23.9
M2_25
23.9
M2_26
23.0
M2_27
23.0
M2_28
23.0
M2_29
23.0
M2_30
23.0
M2_31
23.0
M2_32
22.8
M2_33
22.8
M2_34
22.8
M2_35
22.6
M2_36
22.6
M2_37
22.5
M2_38
22.4
M2_39
22.4
M2_40
22.4
M2_41
22.3
M2_42
22.1
M2_43
22.0
M2_44
22.0
M2_45
21.8
M2_46
21.8
M2_47
21.8
M2_48
21.8
M2_49
21.7
M2_50
21.7
M2_51
21.7
M2_52
21.6
M2_53
21.6
M2_54
21.4
M2_55
21.1
M2_56
21.0
M2_57
21.0
M2_58
20.9
M2_59
20.5
M2_60
20.4
M2_61
20.3
M2_62
20.3
M2_63
20.1
M2_64
20.0
M2_65
20.0
M2_66
19.8
M2_67
19.7
M2_68
19.6
M2_69
19.4
M2_70
19.0
M2_71
18.7
M2_72
18.7
M2_73
18.6
M2_74
18.5
M2_75
18.1
M2_76
17.9
M2_77
17.7
M2_78
17.6
M2_79
17.6
M2_80
17.5
M2_81
17.4
M2_82
17.3
M2_83
17.3
M2_84
17.3
M2_85
16.9
M2_86
16.8
M2_87
16.8
M2_88
16.8
M2_89
16.4
M2_90
16.4
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