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  • ATP5MC2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:439.2 nTPM
HPA Brain:239.2 nTPM
GTEx:439.2 nTPM
FANTOM5:104.9 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:39.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.2
Sample id Sample description nTPM
Amygdala
nTPM: 239.2
2695 Female, age 67, right hemisphere 279.1
2514 Male, age 75, right hemisphere 243.5
2814 Male, age 76, right hemisphere 242.3
2517 Female, age 94, left hemisphere 218.9
1987 Female, age 91, left hemisphere 212.4
Basal amygdala
nTPM: 211.8
2609 Male, age 75, right hemisphere 262.8
2827 Female, age 67, right hemisphere 223.8
2685 Female, age 94, left hemisphere 209.7
2110 Male, age 80, left hemisphere 202.7
1955 Male, age 76, both hemispheres 191.8
2243 Female, age 91, right hemisphere 179.8
Central amygdala
nTPM: 237.0
2826 Female, age 94, left hemisphere 337.4
1905 Male, age 76, both hemispheres 228.5
2515 Male, age 75, right hemisphere 228.0
2701 Female, age 91, right hemisphere 206.7
2239 Male, age 80, left hemisphere 184.5
Corticomedial amygdala
nTPM: 188.9
2428 Male, age 75, right hemisphere 246.3
2829 Male, age 80, left hemisphere 195.5
2242 Female, age 91, right hemisphere 183.3
2240 Male, age 76, both hemispheres 171.1
2429 Female, age 94, left hemisphere 168.7
2535 Female, age 67, right hemisphere 168.7
Lateral amygdala
nTPM: 221.8
2830 Female, age 67, right hemisphere 281.1
2516 Male, age 75, right hemisphere 262.5
2534 Female, age 94, left hemisphere 222.3
1883 Male, age 76, both hemispheres 205.2
2256 Male, age 80, left hemisphere 181.2
2255 Female, age 91, right hemisphere 178.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 439.2
Samples: 181

Max nTPM: 921.8
Min nTPM: 255.4
Std nTPM: 95.3
Median nTPM: 422.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 921.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 778.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 753.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 737.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 684.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 683.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 680.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 609.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 600.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 590.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 589.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 587.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 580.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 574.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 565.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 565.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 559.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 554.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 548.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 545.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 543.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 543.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 531.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 530.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 528.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 527.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 523.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 521.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 519.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 518.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 515.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 512.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 512.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 511.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 505.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 501.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 501.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 495.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 494.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 493.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 491.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 489.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 489.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 489.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 486.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 485.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 485.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 484.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 482.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 480.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 479.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 475.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 474.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 473.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 470.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 470.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 467.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 464.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 463.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 457.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 455.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 455.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 455.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 452.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 450.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 450.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 450.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 448.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 445.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 444.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 443.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 439.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 436.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 436.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 435.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 434.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 434.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 433.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 432.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 432.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 431.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 430.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 430.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 430.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 429.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 427.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 427.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 425.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 424.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 422.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 422.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 422.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 421.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 421.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 420.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 420.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 418.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 417.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 416.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 415.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 414.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 412.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 411.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 407.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 405.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 405.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 404.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 403.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 402.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 401.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 399.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 398.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 396.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 396.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 396.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 391.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 389.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 389.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 387.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 383.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 383.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 382.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 380.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 380.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 380.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 379.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 379.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 378.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 378.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 378.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 377.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 377.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 377.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 377.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 376.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 375.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 375.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 373.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 370.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 369.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 367.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 367.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 366.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 364.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 364.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 363.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 360.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 359.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 356.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 355.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 355.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 355.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 354.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 354.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 353.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 353.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 353.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 352.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 351.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 350.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 349.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 348.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 348.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 344.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 343.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 340.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 340.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 337.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 333.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 333.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 332.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 330.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 326.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 321.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 318.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 310.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 308.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 305.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 305.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 301.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 255.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

104.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 104.9
FF:10151-102I7 76 years, female 104.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.0
Pig sample Sample description nTPM
Amygdala
nTPM: 30.0
Samples: 4

Max nTPM: 34.1
Min nTPM: 26.2
Sample A Female 34.1
Sample B Female 31.7
Sample C Male 28.1
Sample D Male 26.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 39.2
Samples: 4

Max nTPM: 46.0
Min nTPM: 33.9
Sample A Male 38.7
Sample B Male 38.0
Sample C Female 46.0
Sample D Female 33.9

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