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ATP5MC2
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ATP5MC2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:359.7 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:32.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051469
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

359.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 359.7
Samples: 300

Max nTPM: 612.0
Min nTPM: 193.1
Std nTPM: 68.4
Median nTPM: 351.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 612.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 572.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 555.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 544.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 531.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 529.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 528.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 526.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 524.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 519.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 507.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 506.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 504.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 503.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 497.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 492.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 490.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 487.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 486.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 473.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 469.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 459.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 457.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 451.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 447.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 445.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 445.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 445.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 445.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 444.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 444.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 443.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 443.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 443.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 442.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 441.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 441.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 440.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 439.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 439.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 434.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 434.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 433.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 431.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 430.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 430.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 428.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 428.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 424.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 422.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 422.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 422.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 419.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 418.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 417.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 417.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 415.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 415.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 415.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 413.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 413.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 413.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 412.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 410.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 409.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 409.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 408.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 408.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 408.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 408.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 405.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 403.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 402.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 401.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 400.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 400.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 399.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 397.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 397.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 394.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 392.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 391.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 391.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 390.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 390.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 389.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 387.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 386.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 385.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 385.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 384.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 383.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 383.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 383.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 381.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 380.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 379.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 378.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 378.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 378.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 377.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 377.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 376.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 376.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 375.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 375.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 375.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 375.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 374.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 372.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 372.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 372.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 371.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 371.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 370.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 370.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 370.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 370.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 370.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 369.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 368.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 368.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 367.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 366.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 365.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 365.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 365.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 364.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 363.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 363.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 363.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 362.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 362.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 360.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 360.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 360.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 359.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 358.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 358.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 357.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 356.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 355.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 355.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 355.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 354.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 352.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 351.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 351.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 351.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 351.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 351.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 350.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 350.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 349.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 349.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 349.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 348.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 348.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 347.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 347.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 346.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 345.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 344.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 343.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 343.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 343.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 342.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 342.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 342.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 341.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 341.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 340.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 340.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 340.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 339.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 339.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 338.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 337.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 337.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 336.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 335.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 335.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 335.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 335.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 334.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 334.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 334.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 333.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 333.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 333.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 332.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 332.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 332.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 332.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 332.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 331.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 330.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 330.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 329.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 329.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 329.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 328.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 328.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 327.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 326.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 325.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 324.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 323.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 322.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 320.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 320.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 319.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 319.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 319.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 318.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 318.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 318.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 317.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 316.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 316.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 315.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 315.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 314.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 314.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 314.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 314.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 313.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 312.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 312.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 312.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 310.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 309.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 309.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 309.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 308.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 307.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 305.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 305.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 303.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 303.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 301.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 299.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 299.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 297.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 297.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 296.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 293.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 293.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 293.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 292.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 291.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 291.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 291.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 291.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 290.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 290.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 289.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 289.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 288.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 287.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 287.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 285.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 284.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 284.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 284.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 284.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 282.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 282.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 282.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 281.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 279.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 278.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 278.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 277.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 276.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 273.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 270.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 269.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 269.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 269.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 268.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 266.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 265.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 265.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 263.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 262.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 262.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 261.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 259.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 255.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 253.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 251.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 249.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 249.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 247.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 246.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 223.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 214.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 202.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 193.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.6
FF:10164-103B2 76 years, female 93.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.6
Pig sample Sample description nTPM
Caudate
nTPM: 32.6
Samples: 4

Max nTPM: 35.5
Min nTPM: 29.8
Sample A Female 30.1
Sample B Female 34.9
Sample C Male 35.5
Sample D Male 29.8

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