MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:435.6 nTPM
HPA Brain:239.4 nTPM
GTEx:435.6 nTPM
FANTOM5:104.5 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:19.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 239.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 229.0
2666 Male, age 74, left hemisphere 253.6
1870 Female, age 42, unknown 249.5
2586 Male, age 75, left hemisphere 242.6
1827 Male, age 72, unknown 241.3
1833 Male, age 53, unknown 233.4
1830 Male, age 51, unknown 229.8
2828 Female, age 72, unknown 228.6
2411 Female, age 72, unknown 217.3
2019 Male, age 18, unknown 217.1
2219 Male, age 76, both hemispheres 176.9
Dorsal raphe nucleus
nTPM: 220.1
2750 Male, age 76, both hemispheres 228.7
2298 Female, age 72, unknown 223.1
2016 Female, age 72, unknown 219.9
1828 Male, age 53, unknown 218.4
2047 Male, age 72, unknown 210.2
Inferior colliculus
nTPM: 212.9
2097 Female, age 72, unknown 222.2
2849 Male, age 72, unknown 221.2
1890 Male, age 53, unknown 205.3
1848 Female, age 42, unknown 203.0
Median raphe nucleus
nTPM: 202.3
2220 Male, age 76, midline 202.3
Periaquaductal grey, anterior
nTPM: 200.3
1947 Male, age 18, unknown 202.3
2502 Female, age 75, unknown 200.4
1795 Male, age 51, unknown 198.3
Periaquaductal grey, dorsal
nTPM: 196.5
1831 Male, age 72, unknown 204.2
2850 Male, age 76, both hemispheres 201.3
1840 Male, age 53, unknown 198.5
2464 Female, age 72, unknown 182.1
Periaquaductal grey, lateral
nTPM: 202.0
2053 Male, age 18, unknown 218.2
2140 Male, age 76, both hemispheres 196.4
2272 Male, age 74, both hemispheres 191.2
Pretectal area
nTPM: 217.2
2007 Male, age 72, unknown 233.9
1815 Male, age 53, unknown 233.4
1817 Female, age 42, unknown 233.0
2667 Female, age 75, unknown 229.7
2825 Male, age 18, unknown 229.4
1816 Male, age 51, unknown 221.8
2316 Male, age 76, right hemisphere 216.8
2224 Female, age 72, unknown 202.6
2407 Male, age 75, both hemispheres 199.1
1944 Female, age 72, unknown 196.6
2273 Male, age 74, both hemispheres 193.1
Red nucleus
nTPM: 239.1
1821 Female, age 72, unknown 265.3
2503 Female, age 72, unknown 256.1
2823 Male, age 76, right hemisphere 255.3
1865 Male, age 51, unknown 244.4
1954 Female, age 42, unknown 243.2
1904 Male, age 53, unknown 242.3
2584 Male, age 75, left hemisphere 240.0
2227 Male, age 72, unknown 230.7
2588 Male, age 74, left hemisphere 228.7
2725 Female, age 75, unknown 227.9
2769 Male, age 72, unknown 222.8
2785 Male, age 18, unknown 212.3
Substantia nigra
nTPM: 239.4
1916 Female, age 42, unknown 268.5
2699 Male, age 18, unknown 268.4
2665 Male, age 74, both hemispheres 265.7
1851 Male, age 51, unknown 253.3
1889 Female, age 72, unknown 237.7
1941 Male, age 53, unknown 234.3
2590 Female, age 75, unknown 230.6
2583 Male, age 75, right hemisphere 220.2
2241 Male, age 72, unknown 215.9
2409 Female, age 72, unknown 199.0
Superior colliculus
nTPM: 223.9
2587 Male, age 74, left hemisphere 251.4
1913 Female, age 42, unknown 251.3
1995 Male, age 72, unknown 231.1
2668 Female, age 75, unknown 227.6
2664 Male, age 75, both hemispheres 225.7
1796 Male, age 53, unknown 223.5
1839 Male, age 51, unknown 220.3
1895 Male, age 76, right hemisphere 217.7
2261 Male, age 18, unknown 202.0
2087 Female, age 72, unknown 188.5
Ventral tegmental area
nTPM: 220.4
1915 Female, age 42, unknown 241.2
2410 Female, age 72, unknown 240.2
2223 Female, age 72, unknown 230.0
2021 Male, age 53, unknown 205.5
2218 Male, age 76, both hemispheres 205.2
1942 Male, age 51, unknown 200.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 435.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 435.6
Samples: 183

Max nTPM: 786.2
Min nTPM: 268.6
Std nTPM: 93.5
Median nTPM: 420.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 786.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 753.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 714.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 702.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 692.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 681.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 657.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 655.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 648.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 629.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 606.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.5
FF:10158-103A5 76 years, female 104.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 38.8
Min nTPM: 32.1
Sample A Female 38.8
Sample B Female 34.3
Sample C Male 32.1
Sample D Male 35.8
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 44.1
Min nTPM: 29.8
Sample A Female 44.1
Sample B Female 39.6
Sample C Male 29.8
Sample D Male 30.7
Periaqueductal gray
nTPM: 35.1
Samples: 3

Max nTPM: 36.8
Min nTPM: 32.7
Sample B Female 36.8
Sample C Male 35.9
Sample D Male 32.7
Superior colliculi
nTPM: 36.9
Samples: 4

Max nTPM: 40.3
Min nTPM: 32.4
Sample A Female 40.3
Sample B Female 37.1
Sample C Male 32.4
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 17.3
Sample A Male 18.1
Sample B Male 17.3
Sample C Female 20.2
Sample D Female 21.3

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