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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:256.0 nTPM
GTEx:256.0 nTPM
FANTOM5:137.3 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

256.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 256.0
Samples: 105

Max nTPM: 373.2
Min nTPM: 49.1
Std nTPM: 70.3
Median nTPM:
218_1 71 years, female 373.2
452_1 88 years, female 368.6
377_1 82 years, female 358.4
384_1 83 years, male 357.6
319_1 81 years, male 354.3
394_1 75 years, female 342.2
386_1 76 years, male 337.1
321_1 62 years, female 332.3
379_1 60 years, male 332.1
375_1 74 years, female 331.8
349_1 83 years, male 330.3
354_1 81 years, female 330.3
163_1 78 years, male 328.7
173_1 67 years, male 328.5
322_1 76 years, male 328.1
17_1 71 years, male 326.9
320_1 89 years, female 324.4
172_1 72 years, female 323.2
506_1 65 years, male 322.8
243_1 75 years, male 313.1
447_1 81 years, male 313.0
6_1 73 years, female 312.1
189_1 76 years, male 310.9
376_1 75 years, female 310.5
4_1 88 years, female 308.6
246_1 77 years, male 304.6
295_1 61 years, female 304.6
318_1 68 years, male 302.3
177_1 74 years, male 302.2
153_1 70 years, female 301.7
355_1 70 years, female 299.9
425_1 59 years, female 298.1
389_1 86 years, female 297.5
352_1 62 years, male 295.8
396_1 62 years, male 294.4
351_1 91 years, male 292.6
115_1 83 years, male 292.4
316_1 62 years, male 292.3
503_1 68 years, male 292.1
237_1 82 years, male 291.5
350_1 84 years, female 290.9
317_1 60 years, male 288.6
229_1 69 years, female 288.4
404_1 82 years, female 286.9
526_1 61 years, male 285.5
99_1 64 years, male 284.9
353_1 82 years, female 280.2
35_1 74 years, female 279.8
286_1 68 years, female 279.2
406_1 79 years, male 279.0
356_1 87 years, female 278.0
405_1 91 years, male 276.8
335_1 73 years, female 276.0
145_1 84 years, male 271.7
2_1 77 years, female 271.5
264_1 73 years, female 268.7
265_1 87 years, male 264.1
137_1 83 years, male 262.6
347_1 72 years, male 260.6
348_1 84 years, male 258.6
42_1 85 years, male 255.9
120_1 70 years, female 255.8
254_1 77 years, female 254.1
292_1 71 years, male 254.0
293_1 68 years, female 253.7
41_1 94 years, female 250.2
291_1 76 years, male 244.2
480_1 63 years, male 243.9
18_1 88 years, male 238.9
251_1 78 years, male 236.9
109_1 81 years, female 234.2
517_1 88 years, male 230.4
288_1 66 years, female 223.7
126_1 63 years, male 222.1
9_1 66 years, female 221.7
311_1 78 years, male 219.0
217_1 76 years, male 218.8
266_1 85 years, male 218.7
314_1 67 years, male 217.4
324_1 76 years, male 217.0
468_1 89 years, male 215.9
139_1 64 years, female 211.6
117_1 61 years, male 210.1
142_1 61 years, female 208.4
499_1 55 years, female 206.2
307_1 66 years, female 205.1
518_1 75 years, female 200.0
313_1 79 years, female 192.5
81_1 67 years, male 186.4
119_1 70 years, female 182.7
315_1 62 years, female 171.4
162_1 79 years, female 166.0
495_1 57 years, female 165.0
308_1 70 years, female 162.9
32_1 67 years, male 159.0
43_1 64 years, female 151.1
501_1 88 years, male 129.3
89_1 63 years, male 127.0
415_1 77 years, female 124.5
466_1 57 years, female 122.3
414_1 84 years, female 118.8
149_1 88 years, male 92.1
413_1 59 years, female 62.0
490_1 67 years, female 53.1
491_1 89 years, female 49.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 137.3
FF:10030-101E3 24-65 years, mixed 137.3

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