BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:515.8 nTPM
HPA Brain:227.1 nTPM
GTEx:515.8 nTPM
FANTOM5:205.7 Scaled Tags Per Million
Macaque:44.5 nTPM
Mouse:105.9 nTPM
Rat:85.0 nTPM
Pig:166.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 227.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.3
1870 Female, age 42, unknown 206.1
2828 Female, age 72, unknown 197.5
2666 Male, age 74, left hemisphere 177.7
1827 Male, age 72, unknown 168.8
1833 Male, age 53, unknown 168.7
1830 Male, age 51, unknown 162.2
2411 Female, age 72, unknown 156.3
2586 Male, age 75, left hemisphere 148.3
2219 Male, age 76, both hemispheres 127.5
2019 Male, age 18, unknown 119.6
Dorsal raphe nucleus
nTPM: 212.4
2298 Female, age 72, unknown 244.4
2016 Female, age 72, unknown 228.9
1828 Male, age 53, unknown 213.5
2047 Male, age 72, unknown 206.2
2750 Male, age 76, both hemispheres 169.2
Inferior colliculus
nTPM: 164.7
2097 Female, age 72, unknown 177.7
2849 Male, age 72, unknown 164.5
1890 Male, age 53, unknown 159.7
1848 Female, age 42, unknown 156.8
Median raphe nucleus
nTPM: 174.8
2220 Male, age 76, midline 174.8
Periaquaductal grey, anterior
nTPM: 177.1
1947 Male, age 18, unknown 208.0
1795 Male, age 51, unknown 175.6
2502 Female, age 75, unknown 147.7
Periaquaductal grey, dorsal
nTPM: 175.1
2850 Male, age 76, both hemispheres 222.5
1840 Male, age 53, unknown 183.7
1831 Male, age 72, unknown 164.3
2464 Female, age 72, unknown 129.8
Periaquaductal grey, lateral
nTPM: 177.3
2140 Male, age 76, both hemispheres 185.6
2053 Male, age 18, unknown 177.5
2272 Male, age 74, both hemispheres 168.8
Pretectal area
nTPM: 162.3
2273 Male, age 74, both hemispheres 219.3
2825 Male, age 18, unknown 213.7
2224 Female, age 72, unknown 198.4
2667 Female, age 75, unknown 189.4
2316 Male, age 76, right hemisphere 156.2
1817 Female, age 42, unknown 153.9
1815 Male, age 53, unknown 151.7
2407 Male, age 75, both hemispheres 143.3
1944 Female, age 72, unknown 129.6
2007 Male, age 72, unknown 116.2
1816 Male, age 51, unknown 113.7
Red nucleus
nTPM: 184.3
1821 Female, age 72, unknown 247.9
1865 Male, age 51, unknown 209.5
1954 Female, age 42, unknown 206.9
1904 Male, age 53, unknown 199.9
2725 Female, age 75, unknown 199.7
2823 Male, age 76, right hemisphere 197.8
2769 Male, age 72, unknown 189.7
2503 Female, age 72, unknown 189.0
2227 Male, age 72, unknown 182.3
2584 Male, age 75, left hemisphere 137.4
2588 Male, age 74, left hemisphere 128.5
2785 Male, age 18, unknown 123.4
Substantia nigra
nTPM: 227.1
2699 Male, age 18, unknown 333.3
1916 Female, age 42, unknown 328.1
1851 Male, age 51, unknown 275.7
2241 Male, age 72, unknown 246.1
2409 Female, age 72, unknown 203.9
1889 Female, age 72, unknown 189.3
2665 Male, age 74, both hemispheres 184.1
2590 Female, age 75, unknown 181.3
1941 Male, age 53, unknown 174.4
2583 Male, age 75, right hemisphere 154.7
Superior colliculus
nTPM: 162.2
2587 Male, age 74, left hemisphere 199.8
1995 Male, age 72, unknown 188.1
1913 Female, age 42, unknown 176.8
2668 Female, age 75, unknown 174.6
1796 Male, age 53, unknown 171.5
1839 Male, age 51, unknown 159.9
1895 Male, age 76, right hemisphere 146.5
2664 Male, age 75, both hemispheres 139.3
2087 Female, age 72, unknown 135.4
2261 Male, age 18, unknown 129.9
Ventral tegmental area
nTPM: 201.5
1915 Female, age 42, unknown 269.1
2021 Male, age 53, unknown 201.6
1942 Male, age 51, unknown 189.9
2218 Male, age 76, both hemispheres 188.5
2223 Female, age 72, unknown 186.7
2410 Female, age 72, unknown 173.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 515.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 515.8
Samples: 183

Max nTPM: 1272.9
Min nTPM: 169.0
Std nTPM: 161.7
Median nTPM: 486.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1272.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1212.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1078.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 1055.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1049.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 889.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 889.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 821.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 805.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 790.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 761.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 205.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 205.7
FF:10158-103A5 76 years, female 205.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 44.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 44.5
Samples: 1

Max nTPM: 44.5
Min nTPM: 44.5
Sample A 44.5
Midbrain
nTPM: 39.4
Samples: 1

Max nTPM: 39.4
Min nTPM: 39.4
Sample A 39.4
Superior colliculi
nTPM: 31.1
Samples: 1

Max nTPM: 31.1
Min nTPM: 31.1
Sample A 31.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 166.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 165.2
Samples: 3

Max nTPM: 191.2
Min nTPM: 138.0
Sample A Female 191.2
Sample B Female 166.5
Sample C Male 138.0
Midbrain
nTPM: 115.2
Samples: 3

Max nTPM: 151.1
Min nTPM: 96.4
Sample B Female 151.1
Sample C Male 98.2
Sample D Male 96.4
Periaqueductal gray
nTPM: 125.2
Samples: 3

Max nTPM: 133.9
Min nTPM: 110.9
Sample B Female 133.9
Sample C Male 130.9
Sample D Male 110.9
Superior colliculi
nTPM: 166.4
Samples: 4

Max nTPM: 218.6
Min nTPM: 122.9
Sample A Female 197.8
Sample B Female 218.6
Sample C Male 126.4
Sample D Male 122.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 105.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.0
Samples: 4

Max nTPM: 128.1
Min nTPM: 84.4
Sample A 115.5
Sample B 128.1
Sample C 84.4
Sample D 95.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 85.0
Rat sample Sample description nTPM
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 86.9
Min nTPM: 83.4
Sample A 86.9
Sample A 83.7
Sample A 83.4
Sample A 85.9

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