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  • AGAP2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:131.0 nTPM
HPA Brain:322.6 nTPM
GTEx:131.0 nTPM
FANTOM5:501.9 Scaled Tags Per Million
Pig:222.5 nTPM
Mouse:374.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.6
Sample id Sample description nTPM
Amygdala
nTPM: 153.2
2517 Female, age 94, left hemisphere 230.4
1987 Female, age 91, left hemisphere 227.1
2514 Male, age 75, right hemisphere 175.3
2814 Male, age 76, right hemisphere 75.5
2695 Female, age 67, right hemisphere 57.5
Basal amygdala
nTPM: 322.6
2243 Female, age 91, right hemisphere 445.3
2685 Female, age 94, left hemisphere 415.1
2827 Female, age 67, right hemisphere 393.4
2609 Male, age 75, right hemisphere 269.5
2110 Male, age 80, left hemisphere 252.8
1955 Male, age 76, both hemispheres 159.6
Central amygdala
nTPM: 217.1
2826 Female, age 94, left hemisphere 351.8
2239 Male, age 80, left hemisphere 300.3
2515 Male, age 75, right hemisphere 185.6
2701 Female, age 91, right hemisphere 174.2
1905 Male, age 76, both hemispheres 73.4
Corticomedial amygdala
nTPM: 311.7
2535 Female, age 67, right hemisphere 434.1
2242 Female, age 91, right hemisphere 406.5
2829 Male, age 80, left hemisphere 354.3
2429 Female, age 94, left hemisphere 297.5
2428 Male, age 75, right hemisphere 235.2
2240 Male, age 76, both hemispheres 142.4
Lateral amygdala
nTPM: 230.7
2534 Female, age 94, left hemisphere 329.1
2256 Male, age 80, left hemisphere 298.7
2255 Female, age 91, right hemisphere 293.5
2830 Female, age 67, right hemisphere 217.9
1883 Male, age 76, both hemispheres 125.3
2516 Male, age 75, right hemisphere 119.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 131.0
Samples: 181

Max nTPM: 311.8
Min nTPM: 14.6
Std nTPM: 61.5
Median nTPM: 124.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 311.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 301.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 259.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 245.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 245.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 244.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 243.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 241.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 239.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 232.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 231.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 231.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 230.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 229.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 227.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 227.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 226.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 226.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 217.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 216.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 216.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 214.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 212.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 210.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 207.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 204.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 197.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 196.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 196.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 195.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 191.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 189.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 189.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 187.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 185.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 185.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 182.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 182.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 182.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 182.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 179.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 177.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 176.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 175.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 175.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 174.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 174.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 172.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 171.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 170.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 170.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 170.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 166.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 164.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 164.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 163.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 161.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 160.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 158.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 158.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 158.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 158.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 157.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 156.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 155.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 152.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 151.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 149.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 148.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 147.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 147.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 147.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 146.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 141.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 138.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 138.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 135.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 134.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 133.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 131.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 131.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 131.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 131.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 129.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 129.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 126.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 126.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 126.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 125.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 124.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 123.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 123.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 123.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 122.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 122.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 121.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 120.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 119.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 118.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 112.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 112.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 111.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 110.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 107.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 107.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 107.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 106.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 105.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 105.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 102.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 101.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 99.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 98.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 96.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 94.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 93.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 93.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 93.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 90.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 90.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 89.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 88.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 88.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 88.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 87.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 87.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 86.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 85.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 81.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 79.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 76.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 75.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 74.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 74.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 73.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 70.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 70.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 70.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 70.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 69.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 67.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 63.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 57.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 56.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 54.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 52.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 51.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 51.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 51.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 50.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 50.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 49.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 49.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 48.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 47.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 41.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 38.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 37.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 37.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 33.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 31.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 30.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 25.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 19.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 14.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

501.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 501.9
FF:10151-102I7 76 years, female 501.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.5
Pig sample Sample description nTPM
Amygdala
nTPM: 222.5
Samples: 4

Max nTPM: 269.2
Min nTPM: 160.2
Sample A Female 269.2
Sample B Female 160.2
Sample C Male 237.9
Sample D Male 222.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

374.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 374.7
Samples: 4

Max nTPM: 434.7
Min nTPM: 319.3
Sample A Male 319.3
Sample B Male 389.4
Sample C Female 434.7
Sample D Female 355.4

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