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  • BLOC1S1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:273.9 nTPM
HPA Brain:100.0 nTPM
GTEx:273.9 nTPM
FANTOM5:83.6 Scaled Tags Per Million
Pig:126.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 100.0
1981 Female, age 72, midline 123.5
2565 Male, age 75, midline 108.6
2816 Male, age 47, midline 92.2
2194 Female, age 79, both hemispheres 89.4
2048 Male, age 55, midline 86.5
Cervical spinal cord, dorsal horn
nTPM: 98.9
2173 Female, age 72, unknown 137.3
2296 Male, age 66, both hemispheres 128.4
2069 Male, age 47, both hemispheres 98.1
1877 Male, age 55, unknown 89.8
2297 Male, age 75, both hemispheres 71.9
2721 Male, age 90, both hemispheres 68.1
Cervical spinal cord, ventral horn
nTPM: 94.0
2098 Female, age 72, unknown 130.6
2809 Male, age 90, both hemispheres 104.7
2068 Male, age 55, unknown 89.4
2480 Male, age 75, both hemispheres 86.9
2295 Male, age 66, both hemispheres 80.3
2820 Female, age 79, both hemispheres 72.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 273.9
Samples: 204

Max nTPM: 576.2
Min nTPM: 115.1
Std nTPM: 81.6
Median nTPM: 264.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 576.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 563.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 547.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 503.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 474.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 462.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 447.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 438.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 426.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 425.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 425.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 424.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 422.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 417.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 415.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 413.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 412.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 411.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 393.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 392.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 383.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 367.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 365.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 364.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 364.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 364.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 362.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 361.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 358.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 348.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 345.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 340.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 340.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 339.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 338.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 337.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 337.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 334.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 327.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 325.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 325.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 325.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 324.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 322.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 322.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 321.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 315.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 314.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 312.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 311.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 310.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 310.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 308.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 308.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 307.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 307.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 307.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 306.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 306.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 304.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 304.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 303.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 303.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 302.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 302.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 302.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 301.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 301.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 301.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 299.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 297.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 294.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 293.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 292.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 291.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 289.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 289.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 288.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 286.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 285.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 285.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 284.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 282.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 281.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 281.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 280.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 280.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 279.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 279.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 277.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 275.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 274.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 274.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 274.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 273.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 272.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 268.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 267.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 267.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 266.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 264.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 264.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 264.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 263.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 262.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 261.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 260.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 260.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 258.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 255.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 255.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 254.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 254.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 251.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 251.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 251.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 251.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 249.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 249.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 247.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 246.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 246.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 246.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 245.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 244.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 244.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 244.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 243.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 242.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 241.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 238.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 237.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 235.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 234.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 233.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 231.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 230.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 228.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 228.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 227.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 227.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 227.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 226.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 225.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 225.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 224.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 224.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 224.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 222.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 221.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 219.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 218.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 217.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 217.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 217.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 215.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 214.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 213.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 212.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 211.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 211.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 208.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 206.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 205.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 205.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 204.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 203.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 202.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 201.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 201.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 201.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 200.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 200.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 200.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 198.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 195.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 194.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 194.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 192.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 192.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 187.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 187.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 185.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 175.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 173.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 169.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 165.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 165.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 163.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 162.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 162.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 161.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 161.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 161.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 161.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 160.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 156.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 152.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 152.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 143.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 138.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 133.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 127.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 115.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

83.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 83.6
FF:10181-103D1 60 years, female 86.5
FF:10159-103A6 76 years, female 80.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 126.9
Samples: 4

Max nTPM: 184.0
Min nTPM: 96.0
Sample A Female 96.0
Sample B Female 122.2
Sample C Male 184.0
Sample D Male 105.2
Ventral spinal cord
nTPM: 125.2
Samples: 4

Max nTPM: 141.5
Min nTPM: 112.5
Sample A Female 112.5
Sample B Female 126.7
Sample C Male 141.5
Sample D Male 120.0

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