MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:246.9 nTPM
HPA Brain:89.8 nTPM
GTEx:246.9 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:111.8 nTPM
Mouse:143.7 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.6
1870 Female, age 42, unknown 87.0
2828 Female, age 72, unknown 83.7
1833 Male, age 53, unknown 76.7
1827 Male, age 72, unknown 74.9
2411 Female, age 72, unknown 74.4
1830 Male, age 51, unknown 71.7
2586 Male, age 75, left hemisphere 71.6
2019 Male, age 18, unknown 67.5
2666 Male, age 74, left hemisphere 63.7
2219 Male, age 76, both hemispheres 55.0
Dorsal raphe nucleus
nTPM: 76.6
1828 Male, age 53, unknown 82.8
2298 Female, age 72, unknown 81.0
2016 Female, age 72, unknown 77.1
2750 Male, age 76, both hemispheres 75.4
2047 Male, age 72, unknown 66.8
Inferior colliculus
nTPM: 74.0
1890 Male, age 53, unknown 76.2
2097 Female, age 72, unknown 76.0
2849 Male, age 72, unknown 71.9
1848 Female, age 42, unknown 71.7
Median raphe nucleus
nTPM: 65.8
2220 Male, age 76, midline 65.8
Periaquaductal grey, anterior
nTPM: 66.2
1947 Male, age 18, unknown 68.5
1795 Male, age 51, unknown 68.2
2502 Female, age 75, unknown 62.0
Periaquaductal grey, dorsal
nTPM: 69.6
2850 Male, age 76, both hemispheres 80.0
1831 Male, age 72, unknown 66.7
1840 Male, age 53, unknown 66.4
2464 Female, age 72, unknown 65.4
Periaquaductal grey, lateral
nTPM: 72.8
2272 Male, age 74, both hemispheres 77.1
2053 Male, age 18, unknown 73.4
2140 Male, age 76, both hemispheres 67.8
Pretectal area
nTPM: 71.0
2667 Female, age 75, unknown 80.9
2273 Male, age 74, both hemispheres 78.5
1817 Female, age 42, unknown 77.0
2825 Male, age 18, unknown 76.6
1815 Male, age 53, unknown 70.9
2407 Male, age 75, both hemispheres 70.6
2316 Male, age 76, right hemisphere 70.2
2007 Male, age 72, unknown 67.6
1944 Female, age 72, unknown 64.4
2224 Female, age 72, unknown 64.2
1816 Male, age 51, unknown 59.9
Red nucleus
nTPM: 89.8
1821 Female, age 72, unknown 112.3
1865 Male, age 51, unknown 106.1
2769 Male, age 72, unknown 105.4
2227 Male, age 72, unknown 94.4
1904 Male, age 53, unknown 92.1
2503 Female, age 72, unknown 91.8
1954 Female, age 42, unknown 89.9
2725 Female, age 75, unknown 85.1
2823 Male, age 76, right hemisphere 83.8
2785 Male, age 18, unknown 77.4
2588 Male, age 74, left hemisphere 72.9
2584 Male, age 75, left hemisphere 66.2
Substantia nigra
nTPM: 79.1
2699 Male, age 18, unknown 100.9
1916 Female, age 42, unknown 96.9
1851 Male, age 51, unknown 92.4
1941 Male, age 53, unknown 74.4
1889 Female, age 72, unknown 74.2
2409 Female, age 72, unknown 74.1
2583 Male, age 75, right hemisphere 73.8
2241 Male, age 72, unknown 70.7
2590 Female, age 75, unknown 69.9
2665 Male, age 74, both hemispheres 63.4
Superior colliculus
nTPM: 72.3
2587 Male, age 74, left hemisphere 87.8
1913 Female, age 42, unknown 83.7
2668 Female, age 75, unknown 78.1
1995 Male, age 72, unknown 77.5
1796 Male, age 53, unknown 73.8
1895 Male, age 76, right hemisphere 70.1
2664 Male, age 75, both hemispheres 67.2
1839 Male, age 51, unknown 65.0
2087 Female, age 72, unknown 60.3
2261 Male, age 18, unknown 60.1
Ventral tegmental area
nTPM: 83.6
1915 Female, age 42, unknown 96.4
2223 Female, age 72, unknown 91.5
2410 Female, age 72, unknown 86.7
2218 Male, age 76, both hemispheres 80.5
1942 Male, age 51, unknown 74.9
2021 Male, age 53, unknown 72.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 246.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 246.9
Samples: 183

Max nTPM: 554.2
Min nTPM: 127.1
Std nTPM: 66.6
Median nTPM: 236.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 554.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 474.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 469.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 449.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 412.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 410.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 401.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 392.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 392.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 389.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 369.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.0
FF:10158-103A5 76 years, female 94.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 111.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.2
Samples: 4

Max nTPM: 129.1
Min nTPM: 76.3
Sample A Female 129.1
Sample B Female 86.4
Sample C Male 92.9
Sample D Male 76.3
Midbrain
nTPM: 109.9
Samples: 4

Max nTPM: 146.0
Min nTPM: 90.6
Sample A Female 146.0
Sample B Female 90.9
Sample C Male 112.2
Sample D Male 90.6
Periaqueductal gray
nTPM: 77.8
Samples: 3

Max nTPM: 88.8
Min nTPM: 70.3
Sample B Female 74.3
Sample C Male 88.8
Sample D Male 70.3
Superior colliculi
nTPM: 111.8
Samples: 4

Max nTPM: 131.1
Min nTPM: 97.5
Sample A Female 131.1
Sample B Female 110.3
Sample C Male 108.3
Sample D Male 97.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 143.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 143.8
Samples: 4

Max nTPM: 166.8
Min nTPM: 124.9
Sample A Male 166.8
Sample B Male 124.9
Sample C Female 126.3
Sample D Female 157.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
100144717 Antisense, RP_110421_03_D10, Mouse strain C57BL/6J (56 days, male) 0.0

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