BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:156.4 nTPM
HPA Brain:494.6 nTPM
GTEx:156.4 nTPM
FANTOM5:363.5 Scaled Tags Per Million
Macaque:606.5 nTPM
Mouse:240.6 nTPM
Rat:485.6 nTPM
Pig:491.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 494.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 442.7
2666 Male, age 74, left hemisphere 533.2
1827 Male, age 72, unknown 503.3
2586 Male, age 75, left hemisphere 475.2
2019 Male, age 18, unknown 470.3
2828 Female, age 72, unknown 436.3
1833 Male, age 53, unknown 411.7
2411 Female, age 72, unknown 409.1
2219 Male, age 76, both hemispheres 403.6
1870 Female, age 42, unknown 397.2
1830 Male, age 51, unknown 387.1
Dorsal raphe nucleus
nTPM: 391.6
2298 Female, age 72, unknown 473.0
2750 Male, age 76, both hemispheres 408.5
2047 Male, age 72, unknown 406.2
1828 Male, age 53, unknown 380.9
2016 Female, age 72, unknown 289.4
Inferior colliculus
nTPM: 441.5
2849 Male, age 72, unknown 473.6
1848 Female, age 42, unknown 468.1
2097 Female, age 72, unknown 454.2
1890 Male, age 53, unknown 370.0
Median raphe nucleus
nTPM: 494.6
2220 Male, age 76, midline 494.6
Periaquaductal grey, anterior
nTPM: 493.7
2502 Female, age 75, unknown 509.2
1947 Male, age 18, unknown 496.7
1795 Male, age 51, unknown 475.1
Periaquaductal grey, dorsal
nTPM: 349.7
1840 Male, age 53, unknown 372.1
2464 Female, age 72, unknown 367.0
1831 Male, age 72, unknown 337.0
2850 Male, age 76, both hemispheres 322.6
Periaquaductal grey, lateral
nTPM: 319.6
2053 Male, age 18, unknown 338.2
2140 Male, age 76, both hemispheres 327.0
2272 Male, age 74, both hemispheres 293.7
Pretectal area
nTPM: 494.0
1816 Male, age 51, unknown 634.8
1817 Female, age 42, unknown 618.4
2667 Female, age 75, unknown 607.8
1944 Female, age 72, unknown 604.4
2007 Male, age 72, unknown 593.0
1815 Male, age 53, unknown 512.6
2224 Female, age 72, unknown 425.9
2407 Male, age 75, both hemispheres 406.9
2825 Male, age 18, unknown 403.2
2316 Male, age 76, right hemisphere 326.7
2273 Male, age 74, both hemispheres 299.9
Red nucleus
nTPM: 393.4
2785 Male, age 18, unknown 465.5
2584 Male, age 75, left hemisphere 454.9
1821 Female, age 72, unknown 426.0
2588 Male, age 74, left hemisphere 409.0
1954 Female, age 42, unknown 393.8
2227 Male, age 72, unknown 391.6
1865 Male, age 51, unknown 387.1
2823 Male, age 76, right hemisphere 387.0
2769 Male, age 72, unknown 378.0
1904 Male, age 53, unknown 362.0
2503 Female, age 72, unknown 352.2
2725 Female, age 75, unknown 313.9
Substantia nigra
nTPM: 406.0
1941 Male, age 53, unknown 547.7
1889 Female, age 72, unknown 523.4
1916 Female, age 42, unknown 514.3
1851 Male, age 51, unknown 407.3
2665 Male, age 74, both hemispheres 407.0
2241 Male, age 72, unknown 381.3
2583 Male, age 75, right hemisphere 377.1
2699 Male, age 18, unknown 311.3
2409 Female, age 72, unknown 304.4
2590 Female, age 75, unknown 285.9
Superior colliculus
nTPM: 471.2
2668 Female, age 75, unknown 609.6
2087 Female, age 72, unknown 545.7
2664 Male, age 75, both hemispheres 533.5
1796 Male, age 53, unknown 518.8
2261 Male, age 18, unknown 515.5
1895 Male, age 76, right hemisphere 473.0
1839 Male, age 51, unknown 436.9
2587 Male, age 74, left hemisphere 379.7
1913 Female, age 42, unknown 377.8
1995 Male, age 72, unknown 321.2
Ventral tegmental area
nTPM: 410.2
2218 Male, age 76, both hemispheres 470.9
2410 Female, age 72, unknown 449.1
2223 Female, age 72, unknown 431.6
1915 Female, age 42, unknown 411.4
1942 Male, age 51, unknown 377.4
2021 Male, age 53, unknown 320.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 156.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.4
Samples: 183

Max nTPM: 578.8
Min nTPM: 46.2
Std nTPM: 71.8
Median nTPM: 139.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 578.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 468.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 338.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 336.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 316.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 302.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 288.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 283.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 273.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 271.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 266.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 363.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 363.5
FF:10158-103A5 76 years, female 363.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 606.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 280.4
Samples: 1

Max nTPM: 280.4
Min nTPM: 280.4
Sample A 280.4
Midbrain
nTPM: 349.7
Samples: 1

Max nTPM: 349.7
Min nTPM: 349.7
Sample A 349.7
Superior colliculi
nTPM: 606.5
Samples: 1

Max nTPM: 606.5
Min nTPM: 606.5
Sample A 606.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 491.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 379.3
Samples: 3

Max nTPM: 447.5
Min nTPM: 247.7
Sample A Female 447.5
Sample B Female 247.7
Sample C Male 442.7
Midbrain
nTPM: 486.3
Samples: 3

Max nTPM: 625.1
Min nTPM: 301.5
Sample B Female 301.5
Sample C Male 625.1
Sample D Male 532.3
Periaqueductal gray
nTPM: 329.3
Samples: 3

Max nTPM: 385.1
Min nTPM: 296.6
Sample B Female 296.6
Sample C Male 385.1
Sample D Male 306.1
Superior colliculi
nTPM: 491.3
Samples: 4

Max nTPM: 634.2
Min nTPM: 232.9
Sample A Female 540.7
Sample B Female 232.9
Sample C Male 634.2
Sample D Male 557.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 240.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 240.7
Samples: 4

Max nTPM: 271.1
Min nTPM: 200.7
Sample A 200.7
Sample B 254.8
Sample C 271.1
Sample D 236.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 485.6
Rat sample Sample description nTPM
Midbrain
nTPM: 485.6
Samples: 4

Max nTPM: 542.7
Min nTPM: 405.6
Sample A 491.6
Sample A 542.7
Sample A 502.4
Sample A 405.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo