HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:34.1 nTPM
HPA Brain:61.2 nTPM
GTEx:34.1 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:53.8 nTPM
Mouse:42.0 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022129
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 61.2
Sample id Sample description nTPM
Hippocampus
nTPM: 56.3
1898 Male, age 80, left hemisphere 62.9
1911 Female, age 85, right hemisphere 60.2
2529 Female, age 94, left hemisphere 58.0
1855 Male, age 76, left hemisphere 55.1
2148 Female, age 91, left hemisphere 51.4
2621 Female, age 67, right hemisphere 50.6
Dentate gyrus
nTPM: 54.9
2010 Male, age 76, both hemispheres 70.1
2530 Female, age 94, left hemisphere 57.0
1927 Female, age 91, both hemispheres 54.3
2528 Male, age 74, both hemispheres 53.0
2246 Female, age 85, both hemispheres 48.4
2531 Female, age 67, both hemispheres 46.9
Entorhinal gyrus
nTPM: 52.1
2117 Female, age 91, right hemisphere 60.2
1938 Female, age 85, left hemisphere 59.6
2764 Male, age 80, right hemisphere 52.1
1787 Male, age 76, left hemisphere 51.7
2613 Female, age 94, left hemisphere 51.4
2686 Male, age 75, right hemisphere 37.6
Hippocampus, CA1
nTPM: 61.2
2749 Male, age 80, left hemisphere 93.9
1873 Female, age 85, both hemispheres 59.6
2045 Male, age 76, both hemispheres 56.6
2527 Male, age 74, both hemispheres 54.2
2082 Female, age 91, right hemisphere 41.5
Hippocampus, CA2
nTPM: 54.3
1963 Male, age 80, left hemisphere 67.1
1892 Male, age 76, both hemispheres 58.3
2249 Male, age 74, both hemispheres 57.5
1940 Female, age 85, left hemisphere 48.8
2437 Female, age 94, left hemisphere 47.3
2113 Female, age 91, right hemisphere 47.2
Hippocampus, CA3
nTPM: 57.7
2137 Male, age 80, left hemisphere 78.5
1867 Male, age 76, both hemispheres 57.2
1891 Female, age 85, both hemispheres 55.1
2861 Female, age 67, both hemispheres 53.1
2620 Female, age 94, left hemisphere 52.8
2436 Male, age 74, both hemispheres 49.6
Parahippocampal cortex
nTPM: 48.4
2018 Male, age 76, both hemispheres 55.9
1933 Female, age 85, both hemispheres 54.5
1990 Female, age 91, right hemisphere 52.3
2250 Female, age 67, right hemisphere 51.9
2245 Female, age 91, both hemispheres 50.5
1850 Male, age 80, both hemispheres 50.1
2692 Male, age 74, both hemispheres 44.1
2532 Female, age 72, left hemisphere 43.5
2622 Female, age 67, right hemisphere 41.4
2693 Female, age 94, both hemispheres 39.4
Perirhinal gyrus
nTPM: 49.0
1847 Female, age 91, left hemisphere 52.5
1841 Female, age 85, right hemisphere 51.8
1794 Male, age 80, right hemisphere 49.6
2848 Male, age 76, right hemisphere 46.3
2521 Female, age 94, right hemisphere 44.8
Subiculum
nTPM: 53.7
1901 Male, age 80, both hemispheres 61.9
2042 Male, age 76, both hemispheres 60.1
1977 Female, age 85, both hemispheres 57.5
2729 Female, age 91, right hemisphere 50.8
2619 Male, age 74, both hemispheres 46.8
2438 Female, age 94, left hemisphere 44.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 34.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.1
Samples: 255

Max nTPM: 56.1
Min nTPM: 19.4
Std nTPM: 6.3
Median nTPM: 33.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 56.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 55.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 54.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 53.4
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 51.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 50.5
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 50.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 50.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 48.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 46.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 46.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.4
FF:10153-102I9 76 years, female 57.2
FF:10169-103B7 60 years, female 47.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 53.8
Pig sample Sample description nTPM
Subiculum
nTPM: 53.8
Samples: 4

Max nTPM: 63.3
Min nTPM: 48.2
Sample A Female 63.3
Sample B Female 51.3
Sample C Male 52.4
Sample D Male 48.2
Dorsal hippocampus
nTPM: 53.6
Samples: 4

Max nTPM: 60.1
Min nTPM: 47.6
Sample A Female 60.1
Sample B Female 51.6
Sample C Male 55.1
Sample D Male 47.6
Entorhinal cortex
nTPM: 50.7
Samples: 4

Max nTPM: 55.6
Min nTPM: 46.4
Sample A Female 47.6
Sample B Female 53.0
Sample C Male 55.6
Sample D Male 46.4
Ventral hippocampus
nTPM: 49.9
Samples: 4

Max nTPM: 56.5
Min nTPM: 43.4
Sample A Female 47.9
Sample B Female 43.4
Sample C Male 51.9
Sample D Male 56.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 42.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.0
Samples: 4

Max nTPM: 44.3
Min nTPM: 40.0
Sample A Male 44.3
Sample B Male 42.8
Sample C Female 40.0
Sample D Female 40.8
Hippocampal formation
nTPM: 40.6
Samples: 4

Max nTPM: 42.3
Min nTPM: 37.2
Sample A Male 41.4
Sample B Male 41.6
Sample C Female 42.3
Sample D Female 37.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
70473879 Antisense, RP_050614_04_D10, Mouse strain C57BL/6J (56 days, male) 1.8
77340476 Antisense, RP_070116_02_D01, Mouse strain C57BL/6J (56 days, male) 0.8

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