MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.7 nTPM
HPA Brain:60.5 nTPM
GTEx:34.7 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:67.2 nTPM
Mouse:39.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.0
2586 Male, age 75, left hemisphere 87.5
1870 Female, age 42, unknown 59.9
2828 Female, age 72, unknown 59.4
1833 Male, age 53, unknown 59.0
2411 Female, age 72, unknown 55.6
2019 Male, age 18, unknown 54.7
1830 Male, age 51, unknown 54.4
1827 Male, age 72, unknown 51.2
2666 Male, age 74, left hemisphere 50.2
2219 Male, age 76, both hemispheres 47.8
Dorsal raphe nucleus
nTPM: 57.9
2016 Female, age 72, unknown 65.3
2047 Male, age 72, unknown 59.7
1828 Male, age 53, unknown 59.1
2298 Female, age 72, unknown 53.7
2750 Male, age 76, both hemispheres 51.6
Inferior colliculus
nTPM: 58.5
2097 Female, age 72, unknown 64.7
1848 Female, age 42, unknown 59.7
1890 Male, age 53, unknown 58.4
2849 Male, age 72, unknown 51.4
Median raphe nucleus
nTPM: 60.5
2220 Male, age 76, midline 60.5
Periaquaductal grey, anterior
nTPM: 59.3
2502 Female, age 75, unknown 70.2
1947 Male, age 18, unknown 56.4
1795 Male, age 51, unknown 51.4
Periaquaductal grey, dorsal
nTPM: 53.7
1840 Male, age 53, unknown 60.4
2464 Female, age 72, unknown 58.8
1831 Male, age 72, unknown 50.9
2850 Male, age 76, both hemispheres 44.6
Periaquaductal grey, lateral
nTPM: 50.5
2053 Male, age 18, unknown 53.1
2140 Male, age 76, both hemispheres 49.4
2272 Male, age 74, both hemispheres 49.0
Pretectal area
nTPM: 53.4
1816 Male, age 51, unknown 56.5
1817 Female, age 42, unknown 56.2
2224 Female, age 72, unknown 55.7
2007 Male, age 72, unknown 54.9
1944 Female, age 72, unknown 54.1
1815 Male, age 53, unknown 53.1
2407 Male, age 75, both hemispheres 52.8
2825 Male, age 18, unknown 52.7
2273 Male, age 74, both hemispheres 51.7
2316 Male, age 76, right hemisphere 51.7
2667 Female, age 75, unknown 47.9
Red nucleus
nTPM: 58.0
2503 Female, age 72, unknown 67.3
1954 Female, age 42, unknown 63.1
1821 Female, age 72, unknown 61.3
1904 Male, age 53, unknown 61.2
2769 Male, age 72, unknown 60.7
2227 Male, age 72, unknown 59.8
2588 Male, age 74, left hemisphere 58.7
2785 Male, age 18, unknown 56.7
1865 Male, age 51, unknown 55.2
2584 Male, age 75, left hemisphere 54.3
2725 Female, age 75, unknown 49.4
2823 Male, age 76, right hemisphere 48.2
Substantia nigra
nTPM: 57.3
2241 Male, age 72, unknown 65.4
1851 Male, age 51, unknown 62.1
1916 Female, age 42, unknown 61.2
2583 Male, age 75, right hemisphere 59.6
2699 Male, age 18, unknown 58.8
2665 Male, age 74, both hemispheres 56.0
1889 Female, age 72, unknown 55.6
2590 Female, age 75, unknown 54.3
2409 Female, age 72, unknown 52.7
1941 Male, age 53, unknown 47.8
Superior colliculus
nTPM: 56.3
2664 Male, age 75, both hemispheres 66.3
2668 Female, age 75, unknown 64.2
2261 Male, age 18, unknown 58.1
1913 Female, age 42, unknown 57.0
1995 Male, age 72, unknown 56.0
2587 Male, age 74, left hemisphere 55.4
1839 Male, age 51, unknown 55.0
1796 Male, age 53, unknown 52.8
2087 Female, age 72, unknown 51.2
1895 Male, age 76, right hemisphere 46.4
Ventral tegmental area
nTPM: 57.3
1942 Male, age 51, unknown 63.5
1915 Female, age 42, unknown 58.5
2223 Female, age 72, unknown 57.6
2021 Male, age 53, unknown 57.4
2410 Female, age 72, unknown 56.1
2218 Male, age 76, both hemispheres 51.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.7
Samples: 183

Max nTPM: 57.4
Min nTPM: 20.3
Std nTPM: 7.8
Median nTPM: 33.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 57.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 55.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 55.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 54.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 52.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 50.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 50.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 50.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 48.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 48.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 48.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.0
FF:10158-103A5 76 years, female 66.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.2
Samples: 4

Max nTPM: 67.5
Min nTPM: 54.1
Sample A Female 65.0
Sample B Female 54.1
Sample C Male 62.1
Sample D Male 67.5
Midbrain
nTPM: 67.2
Samples: 4

Max nTPM: 83.9
Min nTPM: 60.6
Sample A Female 83.9
Sample B Female 60.6
Sample C Male 63.3
Sample D Male 61.1
Periaqueductal gray
nTPM: 57.1
Samples: 3

Max nTPM: 58.4
Min nTPM: 54.8
Sample B Female 58.4
Sample C Male 58.2
Sample D Male 54.8
Superior colliculi
nTPM: 60.9
Samples: 4

Max nTPM: 67.6
Min nTPM: 48.3
Sample A Female 65.0
Sample B Female 48.3
Sample C Male 62.8
Sample D Male 67.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.1
Samples: 4

Max nTPM: 40.3
Min nTPM: 38.2
Sample A Male 40.3
Sample B Male 39.0
Sample C Female 38.2
Sample D Female 38.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
77340476 Antisense, RP_070116_02_D01, Mouse strain C57BL/6J (56 days, male) 0.4
70473879 Antisense, RP_050614_04_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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