MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:527.2 nTPM
HPA Brain:583.5 nTPM
GTEx:527.2 nTPM
FANTOM5:900.6 Scaled Tags Per Million
Pig:1726.2 nTPM
Mouse:1422.7 nTPM
Allen mouse:16.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 583.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 445.1
2586 Male, age 75, left hemisphere 775.7
1870 Female, age 42, unknown 524.8
1833 Male, age 53, unknown 510.5
2019 Male, age 18, unknown 473.0
2828 Female, age 72, unknown 415.6
1830 Male, age 51, unknown 412.6
2411 Female, age 72, unknown 406.3
1827 Male, age 72, unknown 389.7
2666 Male, age 74, left hemisphere 311.9
2219 Male, age 76, both hemispheres 230.6
Dorsal raphe nucleus
nTPM: 410.0
2750 Male, age 76, both hemispheres 459.4
1828 Male, age 53, unknown 452.6
2016 Female, age 72, unknown 421.7
2047 Male, age 72, unknown 380.7
2298 Female, age 72, unknown 335.7
Inferior colliculus
nTPM: 571.2
1848 Female, age 42, unknown 655.6
2849 Male, age 72, unknown 578.0
2097 Female, age 72, unknown 575.8
1890 Male, age 53, unknown 475.5
Median raphe nucleus
nTPM: 456.4
2220 Male, age 76, midline 456.4
Periaquaductal grey, anterior
nTPM: 465.2
2502 Female, age 75, unknown 687.9
1947 Male, age 18, unknown 362.9
1795 Male, age 51, unknown 344.8
Periaquaductal grey, dorsal
nTPM: 458.7
2850 Male, age 76, both hemispheres 560.4
2464 Female, age 72, unknown 511.1
1840 Male, age 53, unknown 482.7
1831 Male, age 72, unknown 280.7
Periaquaductal grey, lateral
nTPM: 369.1
2140 Male, age 76, both hemispheres 500.0
2053 Male, age 18, unknown 373.7
2272 Male, age 74, both hemispheres 233.5
Pretectal area
nTPM: 438.6
1817 Female, age 42, unknown 601.6
2667 Female, age 75, unknown 575.7
1816 Male, age 51, unknown 472.5
2316 Male, age 76, right hemisphere 457.7
2407 Male, age 75, both hemispheres 451.2
1815 Male, age 53, unknown 441.1
2007 Male, age 72, unknown 424.8
1944 Female, age 72, unknown 417.9
2825 Male, age 18, unknown 386.0
2224 Female, age 72, unknown 320.4
2273 Male, age 74, both hemispheres 275.9
Red nucleus
nTPM: 583.5
1954 Female, age 42, unknown 834.1
1821 Female, age 72, unknown 753.2
1904 Male, age 53, unknown 696.0
2769 Male, age 72, unknown 681.7
2227 Male, age 72, unknown 670.9
1865 Male, age 51, unknown 599.4
2823 Male, age 76, right hemisphere 540.0
2503 Female, age 72, unknown 537.7
2785 Male, age 18, unknown 522.8
2588 Male, age 74, left hemisphere 435.0
2725 Female, age 75, unknown 375.6
2584 Male, age 75, left hemisphere 355.2
Substantia nigra
nTPM: 459.7
2241 Male, age 72, unknown 607.3
2699 Male, age 18, unknown 544.8
1889 Female, age 72, unknown 531.1
1851 Male, age 51, unknown 506.8
1916 Female, age 42, unknown 506.1
2409 Female, age 72, unknown 432.7
2665 Male, age 74, both hemispheres 393.4
2583 Male, age 75, right hemisphere 385.1
2590 Female, age 75, unknown 359.0
1941 Male, age 53, unknown 330.5
Superior colliculus
nTPM: 426.5
2664 Male, age 75, both hemispheres 535.2
1839 Male, age 51, unknown 472.4
2087 Female, age 72, unknown 439.9
2261 Male, age 18, unknown 434.6
1796 Male, age 53, unknown 411.3
1895 Male, age 76, right hemisphere 409.2
2587 Male, age 74, left hemisphere 403.2
1995 Male, age 72, unknown 402.1
2668 Female, age 75, unknown 383.4
1913 Female, age 42, unknown 373.2
Ventral tegmental area
nTPM: 411.7
2410 Female, age 72, unknown 477.2
1915 Female, age 42, unknown 456.1
2218 Male, age 76, both hemispheres 432.7
2021 Male, age 53, unknown 374.0
1942 Male, age 51, unknown 369.4
2223 Female, age 72, unknown 361.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 527.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 527.2
Samples: 183

Max nTPM: 1620.2
Min nTPM: 104.1
Std nTPM: 256.7
Median nTPM: 468.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1620.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1387.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1383.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1369.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1339.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1247.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1164.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1125.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1103.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1090.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1063.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 900.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 900.6
FF:10158-103A5 76 years, female 900.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1726.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1425.9
Samples: 4

Max nTPM: 2194.7
Min nTPM: 1027.4
Sample A Female 1384.1
Sample B Female 1027.4
Sample C Male 1097.5
Sample D Male 2194.7
Midbrain
nTPM: 1557.3
Samples: 4

Max nTPM: 1802.7
Min nTPM: 1213.0
Sample A Female 1802.7
Sample B Female 1730.8
Sample C Male 1213.0
Sample D Male 1482.5
Periaqueductal gray
nTPM: 1087.2
Samples: 3

Max nTPM: 1468.0
Min nTPM: 849.5
Sample B Female 1468.0
Sample C Male 849.5
Sample D Male 944.0
Superior colliculi
nTPM: 1726.2
Samples: 4

Max nTPM: 2281.0
Min nTPM: 1189.8
Sample A Female 2281.0
Sample B Female 1189.8
Sample C Male 1546.3
Sample D Male 1887.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1422.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1422.7
Samples: 4

Max nTPM: 1528.4
Min nTPM: 1322.3
Sample A Male 1379.2
Sample B Male 1322.3
Sample C Female 1528.4
Sample D Female 1460.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.2
67978757 Antisense, RP_040923_01_G08, Mouse strain C57BL/6J (56 days, male) 19.6
74047918 Antisense, RP_051214_02_D03, Mouse strain C57BL/6J (56 days, male) 18.5
74988768 Antisense, RP_060315_05_H12, Mouse strain C57BL/6J (56 days, male) 13.9
70919872 Antisense, RP_050713_02_C01, Mouse strain C57BL/6J (56 days, male) 13.0

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