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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:411.5 nTPM
HPA Brain:465.5 nTPM
GTEx:411.5 nTPM
FANTOM5:756.5 Scaled Tags Per Million
Pig:1614.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

465.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 377.8
2565 Male, age 75, midline 458.2
2048 Male, age 55, midline 388.9
2194 Female, age 79, both hemispheres 370.5
1981 Female, age 72, midline 361.8
2816 Male, age 47, midline 309.5
Cervical spinal cord, dorsal horn
nTPM: 465.5
2297 Male, age 75, both hemispheres 541.5
2069 Male, age 47, both hemispheres 525.9
2721 Male, age 90, both hemispheres 522.1
2296 Male, age 66, both hemispheres 454.3
1877 Male, age 55, unknown 383.0
2173 Female, age 72, unknown 366.0
Cervical spinal cord, ventral horn
nTPM: 441.9
2480 Male, age 75, both hemispheres 621.3
2809 Male, age 90, both hemispheres 538.4
2820 Female, age 79, both hemispheres 428.2
2295 Male, age 66, both hemispheres 372.1
2068 Male, age 55, unknown 351.7
2098 Female, age 72, unknown 339.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 411.5
Samples: 204

Max nTPM: 1342.1
Min nTPM: 178.5
Std nTPM: 196.4
Median nTPM: 353.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1342.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1191.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1168.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1058.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1054.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 978.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 940.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 925.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 910.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 910.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 866.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 858.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 846.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 794.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 793.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 763.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 733.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 663.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 646.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 622.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 616.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 606.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 605.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 595.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 587.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 584.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 580.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 567.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 564.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 560.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 552.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 548.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 546.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 533.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 529.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 525.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 521.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 494.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 489.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 482.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 481.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 479.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 479.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 478.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 476.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 475.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 471.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 470.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 469.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 468.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 465.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 464.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 456.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 451.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 450.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 448.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 447.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 443.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 437.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 437.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 436.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 432.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 431.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 428.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 426.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 421.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 421.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 418.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 416.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 410.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 406.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 403.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 400.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 398.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 395.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 395.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 392.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 389.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 387.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 385.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 381.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 381.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 381.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 381.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 380.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 377.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 376.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 375.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 373.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 369.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 369.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 369.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 365.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 361.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 361.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 359.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 358.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 357.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 356.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 354.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 353.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 353.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 353.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 352.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 351.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 349.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 347.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 345.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 345.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 344.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 343.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 342.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 342.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 341.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 341.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 338.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 338.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 338.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 337.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 333.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 332.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 329.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 329.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 328.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 327.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 325.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 325.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 325.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 323.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 323.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 321.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 317.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 317.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 315.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 314.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 314.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 313.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 312.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 312.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 310.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 309.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 309.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 309.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 308.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 305.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 303.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 303.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 301.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 301.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 298.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 297.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 297.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 297.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 297.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 295.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 294.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 289.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 288.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 286.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 286.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 283.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 281.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 280.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 278.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 278.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 274.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 270.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 267.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 265.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 265.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 264.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 263.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 259.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 258.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 255.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 254.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 250.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 249.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 249.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 249.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 248.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 248.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 248.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 245.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 242.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 242.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 238.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 235.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 234.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 233.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 231.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 229.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 228.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 225.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 225.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 215.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 211.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 206.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 206.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 201.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 195.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 181.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 181.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 178.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

756.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 756.5
FF:10181-103D1 60 years, female 823.6
FF:10159-103A6 76 years, female 689.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1614.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1305.8
Samples: 4

Max nTPM: 1433.9
Min nTPM: 1185.4
Sample A Female 1252.7
Sample B Female 1351.2
Sample C Male 1185.4
Sample D Male 1433.9
Ventral spinal cord
nTPM: 1614.4
Samples: 4

Max nTPM: 1896.4
Min nTPM: 1341.3
Sample A Female 1524.6
Sample B Female 1896.4
Sample C Male 1695.2
Sample D Male 1341.3

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