ITM2C
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • ITM2C
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:715.7 nTPM
HPA Brain:1083.3 nTPM
GTEx:715.7 nTPM
FANTOM5:550.7 Scaled Tags Per Million
Macaque:295.9 nTPM
Mouse:348.9 nTPM
Rat:329.5 nTPM
Pig:459.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1083.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 832.1
2586 Male, age 75, left hemisphere 1356.0
2828 Female, age 72, unknown 1126.0
1827 Male, age 72, unknown 982.5
2666 Male, age 74, left hemisphere 901.7
1870 Female, age 42, unknown 841.2
2219 Male, age 76, both hemispheres 830.5
1833 Male, age 53, unknown 693.1
2411 Female, age 72, unknown 650.3
1830 Male, age 51, unknown 584.2
2019 Male, age 18, unknown 355.3
Dorsal raphe nucleus
nTPM: 930.7
2016 Female, age 72, unknown 1117.2
2047 Male, age 72, unknown 1105.5
2298 Female, age 72, unknown 983.8
1828 Male, age 53, unknown 851.8
2750 Male, age 76, both hemispheres 595.5
Inferior colliculus
nTPM: 1034.1
2849 Male, age 72, unknown 1139.3
1848 Female, age 42, unknown 1063.0
1890 Male, age 53, unknown 991.3
2097 Female, age 72, unknown 942.5
Median raphe nucleus
nTPM: 670.4
2220 Male, age 76, midline 670.4
Periaquaductal grey, anterior
nTPM: 949.4
1795 Male, age 51, unknown 1137.7
1947 Male, age 18, unknown 929.3
2502 Female, age 75, unknown 781.2
Periaquaductal grey, dorsal
nTPM: 1083.3
1840 Male, age 53, unknown 1438.9
1831 Male, age 72, unknown 1073.5
2850 Male, age 76, both hemispheres 979.6
2464 Female, age 72, unknown 841.2
Periaquaductal grey, lateral
nTPM: 1038.8
2053 Male, age 18, unknown 1299.1
2140 Male, age 76, both hemispheres 953.5
2272 Male, age 74, both hemispheres 863.9
Pretectal area
nTPM: 797.6
2825 Male, age 18, unknown 1177.2
2224 Female, age 72, unknown 1058.1
1944 Female, age 72, unknown 871.2
1816 Male, age 51, unknown 843.2
2667 Female, age 75, unknown 813.4
2273 Male, age 74, both hemispheres 744.4
1817 Female, age 42, unknown 726.3
1815 Male, age 53, unknown 703.2
2407 Male, age 75, both hemispheres 687.1
2316 Male, age 76, right hemisphere 646.5
2007 Male, age 72, unknown 502.7
Red nucleus
nTPM: 596.8
2725 Female, age 75, unknown 845.8
2503 Female, age 72, unknown 763.5
2769 Male, age 72, unknown 679.8
2227 Male, age 72, unknown 673.2
2588 Male, age 74, left hemisphere 612.0
1821 Female, age 72, unknown 610.6
2584 Male, age 75, left hemisphere 593.4
1954 Female, age 42, unknown 560.9
2823 Male, age 76, right hemisphere 520.0
1904 Male, age 53, unknown 483.9
1865 Male, age 51, unknown 452.6
2785 Male, age 18, unknown 365.5
Substantia nigra
nTPM: 850.9
2699 Male, age 18, unknown 1362.0
1916 Female, age 42, unknown 1068.9
2665 Male, age 74, both hemispheres 922.8
1851 Male, age 51, unknown 893.0
2583 Male, age 75, right hemisphere 828.9
1941 Male, age 53, unknown 733.9
1889 Female, age 72, unknown 730.3
2590 Female, age 75, unknown 726.8
2241 Male, age 72, unknown 700.6
2409 Female, age 72, unknown 541.8
Superior colliculus
nTPM: 847.1
2664 Male, age 75, both hemispheres 1271.0
1796 Male, age 53, unknown 1043.9
2261 Male, age 18, unknown 925.3
1839 Male, age 51, unknown 923.6
2087 Female, age 72, unknown 841.2
1913 Female, age 42, unknown 767.2
2668 Female, age 75, unknown 743.2
2587 Male, age 74, left hemisphere 721.2
1995 Male, age 72, unknown 656.8
1895 Male, age 76, right hemisphere 578.1
Ventral tegmental area
nTPM: 827.6
1915 Female, age 42, unknown 1004.3
2021 Male, age 53, unknown 901.1
1942 Male, age 51, unknown 892.1
2218 Male, age 76, both hemispheres 779.8
2223 Female, age 72, unknown 700.9
2410 Female, age 72, unknown 687.2

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

715.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 715.7
Samples: 183

Max nTPM: 1997.0
Min nTPM: 94.3
Std nTPM: 353.0
Median nTPM: 671.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1997.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1882.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1852.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1673.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1528.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1479.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1465.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1444.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1418.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1368.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1368.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1336.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1312.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1304.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1299.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1216.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1202.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1181.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1171.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1169.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1168.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1162.9
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1150.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1115.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1081.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1067.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1061.4
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 1039.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 1012.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 987.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 980.8
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 972.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 971.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 969.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 957.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 954.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 940.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 934.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 929.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 926.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 919.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 916.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 901.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 890.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 889.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 885.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 879.6
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 878.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 877.5
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 876.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 873.4
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 871.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 860.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 858.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 852.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 848.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 843.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 841.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 831.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 830.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 823.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 811.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 805.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 795.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 793.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 788.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 780.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 779.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 776.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 776.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 774.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 774.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 772.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 772.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 770.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 766.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 753.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 747.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 745.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 736.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 735.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 735.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 722.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 715.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 707.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 703.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 703.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 690.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 689.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 685.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 684.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 671.6
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 664.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 653.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 652.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 650.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 643.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 637.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 633.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 631.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 626.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 621.2
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 620.5
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 619.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 616.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 605.6
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 605.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 604.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 599.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 599.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 595.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 582.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 580.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 579.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 567.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 560.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 559.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 558.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 558.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 552.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 550.9
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 550.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 550.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 543.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 540.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 521.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 520.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 516.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 515.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 508.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 505.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 502.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 502.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 491.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 490.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 489.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 480.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 476.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 476.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 472.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 467.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 459.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 444.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 442.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 433.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 427.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 426.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 414.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 414.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 410.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 408.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 404.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 400.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 399.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 395.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 392.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 388.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 373.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 354.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 327.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 303.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 302.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 299.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 285.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 275.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 270.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 267.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 266.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 260.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 255.9
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 253.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 251.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 246.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 238.5
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 221.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 199.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 187.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 184.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 144.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 117.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 106.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 95.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 94.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

550.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 550.7
FF:10158-103A5 76 years, female 550.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 292.5
Samples: 1

Max nTPM: 292.5
Min nTPM: 292.5
Sample A 292.5
Midbrain
nTPM: 295.9
Samples: 1

Max nTPM: 295.9
Min nTPM: 295.9
Sample A 295.9
Superior colliculi
nTPM: 279.6
Samples: 1

Max nTPM: 279.6
Min nTPM: 279.6
Sample A 279.6

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 439.4
Samples: 3

Max nTPM: 533.6
Min nTPM: 376.8
Sample A Female 533.6
Sample B Female 376.8
Sample C Male 407.9
Midbrain
nTPM: 453.5
Samples: 3

Max nTPM: 688.5
Min nTPM: 282.7
Sample B Female 282.7
Sample C Male 688.5
Sample D Male 389.3
Periaqueductal gray
nTPM: 355.6
Samples: 3

Max nTPM: 431.0
Min nTPM: 304.1
Sample B Female 304.1
Sample C Male 431.0
Sample D Male 331.8
Superior colliculi
nTPM: 459.4
Samples: 4

Max nTPM: 569.4
Min nTPM: 393.9
Sample A Female 465.2
Sample B Female 409.2
Sample C Male 569.4
Sample D Male 393.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

348.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 348.9
Samples: 4

Max nTPM: 375.9
Min nTPM: 331.4
Sample A 355.0
Sample B 375.9
Sample C 331.4
Sample D 333.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

329.5
Rat sample Sample description nTPM
Midbrain
nTPM: 329.5
Samples: 4

Max nTPM: 344.3
Min nTPM: 305.3
Sample A 344.3
Sample A 330.9
Sample A 337.6
Sample A 305.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.