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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:136.3 nTPM
HPA Brain:123.1 nTPM
GTEx:136.3 nTPM
FANTOM5:148.8 Scaled Tags Per Million
Pig:53.5 nTPM
Mouse:224.8 nTPM
Allen mouse:11.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.1
Sample id Sample description nTPM
Amygdala
nTPM: 123.1
2514 Male, age 75, right hemisphere 147.2
1987 Female, age 91, left hemisphere 132.4
2814 Male, age 76, right hemisphere 129.2
2695 Female, age 67, right hemisphere 108.0
2517 Female, age 94, left hemisphere 98.9
Basal amygdala
nTPM: 92.4
2609 Male, age 75, right hemisphere 147.7
1955 Male, age 76, both hemispheres 103.7
2110 Male, age 80, left hemisphere 94.0
2243 Female, age 91, right hemisphere 91.3
2685 Female, age 94, left hemisphere 87.1
2827 Female, age 67, right hemisphere 30.5
Central amygdala
nTPM: 104.3
2515 Male, age 75, right hemisphere 128.0
1905 Male, age 76, both hemispheres 116.9
2701 Female, age 91, right hemisphere 108.5
2239 Male, age 80, left hemisphere 95.0
2826 Female, age 94, left hemisphere 72.9
Corticomedial amygdala
nTPM: 102.7
2428 Male, age 75, right hemisphere 142.6
2242 Female, age 91, right hemisphere 121.6
2829 Male, age 80, left hemisphere 114.9
2429 Female, age 94, left hemisphere 99.9
2240 Male, age 76, both hemispheres 94.1
2535 Female, age 67, right hemisphere 42.8
Lateral amygdala
nTPM: 80.4
2516 Male, age 75, right hemisphere 118.5
1883 Male, age 76, both hemispheres 108.9
2255 Female, age 91, right hemisphere 89.9
2256 Male, age 80, left hemisphere 72.2
2534 Female, age 94, left hemisphere 67.5
2830 Female, age 67, right hemisphere 25.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 136.3
Samples: 181

Max nTPM: 352.4
Min nTPM: 28.3
Std nTPM: 53.8
Median nTPM: 130.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 352.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 302.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 266.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 249.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 247.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 245.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 242.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 239.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 233.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 231.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 227.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 227.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 226.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 223.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 223.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 222.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 220.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 217.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 216.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 216.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 208.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 205.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 200.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 191.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 191.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 189.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 186.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 186.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 186.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 185.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 184.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 183.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 181.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 173.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 172.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 168.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 168.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 166.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 166.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 163.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 162.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 161.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 161.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 160.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 160.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 159.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 158.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 158.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 158.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 158.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 158.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 157.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 157.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 156.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 156.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 155.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 154.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 154.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 154.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 153.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 150.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 149.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 149.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 147.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 146.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 144.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 143.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 143.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 142.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 142.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 142.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 141.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 140.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 140.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 139.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 139.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 137.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 136.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 136.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 136.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 134.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 132.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 131.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 130.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 130.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 130.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 129.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 128.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 128.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 126.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 125.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 125.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 124.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 124.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 124.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 123.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 123.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 122.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 122.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 121.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 120.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 120.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 119.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 117.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 117.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 116.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 116.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 116.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 115.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 113.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 112.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 112.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 111.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 111.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 110.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 110.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 108.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 108.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 107.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 105.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 104.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 99.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 99.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 98.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 96.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 94.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 94.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 92.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 91.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 89.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 88.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 87.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 86.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 85.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 83.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 82.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 81.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 80.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 79.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 78.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 77.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 77.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 73.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 73.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 71.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 71.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 70.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 69.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 67.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 66.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 65.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 63.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 59.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 56.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 54.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 52.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 52.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 52.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 42.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 34.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 31.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 28.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

148.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 148.8
FF:10151-102I7 76 years, female 148.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.5
Pig sample Sample description nTPM
Amygdala
nTPM: 53.5
Samples: 4

Max nTPM: 61.1
Min nTPM: 45.3
Sample A Female 61.1
Sample B Female 49.3
Sample C Male 58.4
Sample D Male 45.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 224.8
Samples: 4

Max nTPM: 235.6
Min nTPM: 211.7
Sample A Male 219.2
Sample B Male 211.7
Sample C Female 235.6
Sample D Female 232.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.6
70429429 Antisense, RP_050614_01_F06, Mouse strain C57BL/6J (56 days, male) 13.5
74047768 Antisense, RP_051214_01_H06, Mouse strain C57BL/6J (56 days, male) 9.7

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