MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:508.0 nTPM
HPA Brain:253.3 nTPM
GTEx:508.0 nTPM
FANTOM5:389.8 Scaled Tags Per Million
Pig:259.6 nTPM
Mouse:159.2 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 253.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 199.7
2019 Male, age 18, unknown 284.6
2411 Female, age 72, unknown 249.1
1870 Female, age 42, unknown 204.9
1827 Male, age 72, unknown 204.2
2828 Female, age 72, unknown 203.6
2586 Male, age 75, left hemisphere 177.2
1833 Male, age 53, unknown 175.2
2219 Male, age 76, both hemispheres 173.9
1830 Male, age 51, unknown 168.3
2666 Male, age 74, left hemisphere 155.6
Dorsal raphe nucleus
nTPM: 203.0
2298 Female, age 72, unknown 235.6
1828 Male, age 53, unknown 223.2
2750 Male, age 76, both hemispheres 215.6
2047 Male, age 72, unknown 182.0
2016 Female, age 72, unknown 158.4
Inferior colliculus
nTPM: 206.0
2097 Female, age 72, unknown 252.4
1890 Male, age 53, unknown 230.1
1848 Female, age 42, unknown 188.4
2849 Male, age 72, unknown 152.9
Median raphe nucleus
nTPM: 187.6
2220 Male, age 76, midline 187.6
Periaquaductal grey, anterior
nTPM: 209.0
1795 Male, age 51, unknown 222.2
2502 Female, age 75, unknown 202.5
1947 Male, age 18, unknown 202.3
Periaquaductal grey, dorsal
nTPM: 154.6
2464 Female, age 72, unknown 169.1
1840 Male, age 53, unknown 155.5
1831 Male, age 72, unknown 149.2
2850 Male, age 76, both hemispheres 144.8
Periaquaductal grey, lateral
nTPM: 166.6
2272 Male, age 74, both hemispheres 182.5
2053 Male, age 18, unknown 161.3
2140 Male, age 76, both hemispheres 155.9
Pretectal area
nTPM: 224.7
2007 Male, age 72, unknown 302.3
1817 Female, age 42, unknown 281.1
1816 Male, age 51, unknown 261.6
1944 Female, age 72, unknown 250.9
2667 Female, age 75, unknown 230.6
1815 Male, age 53, unknown 222.5
2273 Male, age 74, both hemispheres 207.9
2316 Male, age 76, right hemisphere 199.3
2224 Female, age 72, unknown 190.9
2825 Male, age 18, unknown 168.9
2407 Male, age 75, both hemispheres 155.5
Red nucleus
nTPM: 253.3
2503 Female, age 72, unknown 286.6
1821 Female, age 72, unknown 284.8
2785 Male, age 18, unknown 273.0
2725 Female, age 75, unknown 268.9
2227 Male, age 72, unknown 265.0
2769 Male, age 72, unknown 264.7
2588 Male, age 74, left hemisphere 263.1
1865 Male, age 51, unknown 243.8
1904 Male, age 53, unknown 239.9
1954 Female, age 42, unknown 237.3
2823 Male, age 76, right hemisphere 230.5
2584 Male, age 75, left hemisphere 182.4
Substantia nigra
nTPM: 220.2
1889 Female, age 72, unknown 278.9
1916 Female, age 42, unknown 272.4
1851 Male, age 51, unknown 252.2
2241 Male, age 72, unknown 235.3
2409 Female, age 72, unknown 228.7
1941 Male, age 53, unknown 212.9
2665 Male, age 74, both hemispheres 201.4
2590 Female, age 75, unknown 196.8
2699 Male, age 18, unknown 167.9
2583 Male, age 75, right hemisphere 155.1
Superior colliculus
nTPM: 191.8
2087 Female, age 72, unknown 232.4
2587 Male, age 74, left hemisphere 220.0
1796 Male, age 53, unknown 218.4
2261 Male, age 18, unknown 215.1
2668 Female, age 75, unknown 191.8
1913 Female, age 42, unknown 190.7
1895 Male, age 76, right hemisphere 187.3
1839 Male, age 51, unknown 173.3
1995 Male, age 72, unknown 166.2
2664 Male, age 75, both hemispheres 122.7
Ventral tegmental area
nTPM: 224.1
2223 Female, age 72, unknown 261.5
1915 Female, age 42, unknown 244.4
2410 Female, age 72, unknown 244.3
2218 Male, age 76, both hemispheres 217.1
1942 Male, age 51, unknown 198.4
2021 Male, age 53, unknown 178.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 508.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 508.0
Samples: 183

Max nTPM: 1179.5
Min nTPM: 226.1
Std nTPM: 140.0
Median nTPM: 485.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1179.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 911.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 851.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 843.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 813.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 811.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 795.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 788.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 766.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 746.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 744.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 389.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 389.8
FF:10158-103A5 76 years, female 389.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 259.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 190.9
Samples: 4

Max nTPM: 280.3
Min nTPM: 124.7
Sample A Female 280.3
Sample B Female 157.2
Sample C Male 201.5
Sample D Male 124.7
Midbrain
nTPM: 221.1
Samples: 4

Max nTPM: 293.5
Min nTPM: 186.3
Sample A Female 206.7
Sample B Female 197.7
Sample C Male 293.5
Sample D Male 186.3
Periaqueductal gray
nTPM: 150.4
Samples: 3

Max nTPM: 173.2
Min nTPM: 120.8
Sample B Female 157.3
Sample C Male 173.2
Sample D Male 120.8
Superior colliculi
nTPM: 259.6
Samples: 4

Max nTPM: 347.4
Min nTPM: 190.7
Sample A Female 298.9
Sample B Female 190.7
Sample C Male 347.4
Sample D Male 201.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 159.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 159.2
Samples: 4

Max nTPM: 179.1
Min nTPM: 138.1
Sample A Male 179.1
Sample B Male 154.0
Sample C Female 138.1
Sample D Female 165.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
74743435 Antisense, RP_060306_03_A10, Mouse strain C57BL/6J (56 days, male) 8.7

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