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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:351.2 nTPM
HPA Brain:240.4 nTPM
GTEx:351.2 nTPM
FANTOM5:349.1 Scaled Tags Per Million
Pig:210.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 232.0
1981 Female, age 72, midline 294.4
2194 Female, age 79, both hemispheres 249.1
2565 Male, age 75, midline 211.9
2048 Male, age 55, midline 206.3
2816 Male, age 47, midline 198.6
Cervical spinal cord, dorsal horn
nTPM: 240.4
2173 Female, age 72, unknown 312.0
2296 Male, age 66, both hemispheres 297.1
2069 Male, age 47, both hemispheres 277.2
2297 Male, age 75, both hemispheres 200.3
1877 Male, age 55, unknown 189.5
2721 Male, age 90, both hemispheres 166.2
Cervical spinal cord, ventral horn
nTPM: 239.1
2480 Male, age 75, both hemispheres 286.8
2068 Male, age 55, unknown 276.5
2098 Female, age 72, unknown 255.1
2809 Male, age 90, both hemispheres 239.8
2820 Female, age 79, both hemispheres 199.8
2295 Male, age 66, both hemispheres 176.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 351.2
Samples: 204

Max nTPM: 661.9
Min nTPM: 164.1
Std nTPM: 92.2
Median nTPM: 343.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 661.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 631.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 613.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 591.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 587.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 586.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 577.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 576.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 557.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 514.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 510.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 509.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 501.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 487.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 485.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 485.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 480.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 469.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 469.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 468.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 462.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 462.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 461.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 459.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 458.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 458.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 456.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 452.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 451.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 449.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 448.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 447.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 447.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 445.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 441.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 440.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 440.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 437.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 429.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 428.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 425.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 423.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 422.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 422.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 417.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 416.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 415.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 414.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 413.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 409.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 409.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 409.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 408.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 402.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 399.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 396.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 396.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 395.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 394.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 393.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 393.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 392.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 391.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 385.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 385.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 384.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 378.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 377.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 375.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 375.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 375.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 372.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 372.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 371.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 370.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 370.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 369.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 368.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 368.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 365.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 364.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 362.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 362.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 361.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 361.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 361.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 361.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 357.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 357.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 356.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 353.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 351.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 350.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 347.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 346.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 346.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 345.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 344.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 344.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 344.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 344.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 343.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 342.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 342.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 337.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 335.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 335.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 332.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 332.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 330.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 329.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 323.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 323.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 322.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 321.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 320.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 320.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 319.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 317.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 317.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 317.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 316.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 316.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 313.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 312.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 310.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 310.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 309.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 308.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 306.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 305.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 304.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 304.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 302.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 301.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 300.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 300.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 300.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 300.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 298.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 298.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 296.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 295.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 293.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 292.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 286.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 286.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 286.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 284.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 284.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 282.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 280.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 280.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 279.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 279.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 279.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 278.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 278.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 277.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 275.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 273.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 273.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 272.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 272.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 270.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 269.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 269.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 268.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 267.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 265.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 265.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 262.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 259.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 257.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 257.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 252.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 252.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 251.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 250.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 249.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 248.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 247.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 243.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 242.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 242.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 235.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 235.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 235.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 234.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 232.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 232.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 228.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 226.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 226.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 226.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 224.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 221.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 220.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 218.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 213.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 206.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 202.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 190.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 164.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

349.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 349.1
FF:10181-103D1 60 years, female 461.7
FF:10159-103A6 76 years, female 236.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 166.3
Samples: 4

Max nTPM: 175.7
Min nTPM: 158.1
Sample A Female 175.7
Sample B Female 159.4
Sample C Male 171.9
Sample D Male 158.1
Ventral spinal cord
nTPM: 210.8
Samples: 4

Max nTPM: 243.4
Min nTPM: 164.0
Sample A Female 196.4
Sample B Female 243.4
Sample C Male 239.4
Sample D Male 164.0

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