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  • RAC1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:304.1 nTPM
HPA Brain:230.9 nTPM
GTEx:304.1 nTPM
FANTOM5:247.9 Scaled Tags Per Million
Pig:382.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 177.9
1981 Female, age 72, midline 215.9
2048 Male, age 55, midline 177.1
2565 Male, age 75, midline 176.7
2194 Female, age 79, both hemispheres 166.7
2816 Male, age 47, midline 153.2
Cervical spinal cord, dorsal horn
nTPM: 214.0
2173 Female, age 72, unknown 258.9
2296 Male, age 66, both hemispheres 251.8
2069 Male, age 47, both hemispheres 241.5
2297 Male, age 75, both hemispheres 208.8
1877 Male, age 55, unknown 185.9
2721 Male, age 90, both hemispheres 137.1
Cervical spinal cord, ventral horn
nTPM: 230.9
2480 Male, age 75, both hemispheres 313.2
2809 Male, age 90, both hemispheres 280.4
2295 Male, age 66, both hemispheres 244.4
2098 Female, age 72, unknown 215.1
2068 Male, age 55, unknown 191.3
2820 Female, age 79, both hemispheres 141.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

304.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 304.1
Samples: 204

Max nTPM: 586.1
Min nTPM: 157.4
Std nTPM: 81.7
Median nTPM: 286.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 586.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 570.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 549.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 533.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 532.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 514.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 483.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 479.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 473.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 473.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 461.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 459.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 457.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 454.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 445.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 438.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 430.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 428.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 425.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 417.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 414.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 413.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 408.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 407.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 403.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 398.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 395.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 392.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 388.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 387.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 386.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 380.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 379.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 377.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 374.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 374.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 369.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 369.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 368.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 366.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 364.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 363.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 362.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 361.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 360.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 359.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 359.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 354.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 353.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 350.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 349.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 349.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 348.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 348.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 340.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 340.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 339.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 337.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 337.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 335.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 335.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 334.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 333.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 331.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 331.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 329.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 329.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 328.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 325.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 325.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 321.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 320.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 320.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 318.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 317.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 316.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 314.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 313.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 313.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 311.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 310.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 308.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 308.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 308.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 308.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 306.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 306.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 306.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 305.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 303.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 303.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 297.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 296.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 294.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 294.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 293.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 291.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 290.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 290.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 288.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 287.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 287.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 285.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 285.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 283.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 282.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 281.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 281.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 280.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 280.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 277.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 276.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 276.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 275.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 275.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 274.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 273.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 271.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 271.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 271.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 270.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 268.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 267.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 266.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 265.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 265.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 265.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 265.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 265.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 263.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 263.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 263.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 262.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 259.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 259.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 258.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 258.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 256.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 254.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 252.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 251.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 250.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 250.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 249.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 249.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 249.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 248.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 248.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 247.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 247.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 247.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 246.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 246.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 245.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 243.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 243.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 243.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 241.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 241.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 241.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 240.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 240.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 239.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 238.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 237.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 236.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 233.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 232.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 230.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 230.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 226.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 226.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 226.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 225.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 225.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 224.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 222.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 222.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 222.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 221.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 221.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 219.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 219.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 215.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 215.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 214.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 212.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 212.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 210.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 210.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 210.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 207.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 206.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 204.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 200.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 195.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 193.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 191.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 186.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 181.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 178.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 170.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 168.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 157.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

247.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 247.9
FF:10181-103D1 60 years, female 264.7
FF:10159-103A6 76 years, female 231.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 355.8
Samples: 4

Max nTPM: 426.9
Min nTPM: 303.4
Sample A Female 303.4
Sample B Female 351.2
Sample C Male 426.9
Sample D Male 341.7
Ventral spinal cord
nTPM: 382.8
Samples: 4

Max nTPM: 428.9
Min nTPM: 361.3
Sample A Female 361.3
Sample B Female 362.4
Sample C Male 378.6
Sample D Male 428.9

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