A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.8
nTPM
Monaco:
44.5
nTPM
Schmiedel:
30.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.8
HPA sample
nTPM
Classical monocyte nTPM: 4.5
Samples: 6
Max nTPM: 5.4
Min nTPM: 3.1
P10809_1003
5.4
P10809_1020
4.6
P10809_1039
3.1
P10809_1058
4.4
P10809_1080
5.3
P10809_1107
4.0
Intermediate monocyte nTPM: 6.4
Samples: 6
Max nTPM: 11.1
Min nTPM: 2.7
P10809_1004
6.9
P10809_1023
2.7
P10809_1042
8.0
P10809_1061
11.1
P10809_1081
5.9
P10809_1108
3.8
Non-classical monocyte nTPM: 6.8
Samples: 5
Max nTPM: 15.3
Min nTPM: 4.2
P10809_1005
4.9
P10809_1053
4.6
P10809_1072
15.3
P10809_1082
4.2
P10809_1109
4.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.5
Monaco sample
nTPM
Classical monocyte nTPM: 40.6
Samples: 4
Max nTPM: 44.0
Min nTPM: 37.5
RHH5313_R3680
37.5
RHH5221_R3593
40.2
RHH5250_R3622
44.0
RHH5279_R3651
40.7
Intermediate monocyte nTPM: 34.7
Samples: 4
Max nTPM: 52.1
Min nTPM: 24.5
RHH5314_R3681
28.3
RHH5222_R3594
52.1
RHH5251_R3623
24.5
RHH5280_R3652
33.8
Non-classical monocyte nTPM: 44.6
Samples: 4
Max nTPM: 51.5
Min nTPM: 38.2
RHH5315_R3682
38.2
RHH5223_R3595
39.3
RHH5252_R3624
51.5
RHH5281_R3653
49.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.1
Schmiedel sample id
TPM
Classical monocyte TPM: 23.6
Samples: 91
Max TPM: 32.2
Min TPM: 16.1
MONOCYTES_1
32.2
MONOCYTES_2
30.4
MONOCYTES_3
30.3
MONOCYTES_4
30.0
MONOCYTES_5
29.2
MONOCYTES_6
29.2
MONOCYTES_7
29.0
MONOCYTES_8
28.1
MONOCYTES_9
27.9
MONOCYTES_10
27.7
MONOCYTES_11
27.6
MONOCYTES_12
27.6
MONOCYTES_13
27.6
MONOCYTES_14
27.5
MONOCYTES_15
27.3
MONOCYTES_16
27.3
MONOCYTES_17
27.0
MONOCYTES_18
26.9
MONOCYTES_19
26.5
MONOCYTES_20
26.4
MONOCYTES_21
26.4
MONOCYTES_22
26.3
MONOCYTES_23
26.1
MONOCYTES_24
25.6
MONOCYTES_25
25.5
MONOCYTES_26
25.2
MONOCYTES_27
25.1
MONOCYTES_28
25.0
MONOCYTES_29
24.9
MONOCYTES_30
24.8
MONOCYTES_31
24.7
MONOCYTES_32
24.7
MONOCYTES_33
24.6
MONOCYTES_34
24.6
MONOCYTES_35
24.5
MONOCYTES_36
24.3
MONOCYTES_37
24.1
MONOCYTES_38
24.1
MONOCYTES_39
24.1
MONOCYTES_40
24.0
MONOCYTES_41
24.0
MONOCYTES_42
23.7
MONOCYTES_43
23.6
MONOCYTES_44
23.4
MONOCYTES_45
23.2
MONOCYTES_46
23.0
MONOCYTES_47
22.9
MONOCYTES_48
22.8
MONOCYTES_49
22.5
MONOCYTES_50
22.5
MONOCYTES_51
22.5
MONOCYTES_52
22.3
MONOCYTES_53
22.3
MONOCYTES_54
22.2
MONOCYTES_55
22.1
MONOCYTES_56
22.1
MONOCYTES_57
22.0
MONOCYTES_58
21.9
MONOCYTES_59
21.9
MONOCYTES_60
21.9
MONOCYTES_61
21.9
MONOCYTES_62
21.7
MONOCYTES_63
21.6
MONOCYTES_64
21.6
MONOCYTES_65
21.5
MONOCYTES_66
21.5
MONOCYTES_67
21.4
MONOCYTES_68
21.1
MONOCYTES_69
21.1
MONOCYTES_70
20.9
MONOCYTES_71
20.9
MONOCYTES_72
20.9
MONOCYTES_73
20.8
MONOCYTES_74
20.8
MONOCYTES_75
20.8
MONOCYTES_76
20.6
MONOCYTES_77
20.5
MONOCYTES_78
20.5
MONOCYTES_79
20.5
MONOCYTES_80
20.5
MONOCYTES_81
20.4
MONOCYTES_82
20.4
MONOCYTES_83
20.3
MONOCYTES_84
20.0
MONOCYTES_85
19.7
MONOCYTES_86
19.4
MONOCYTES_87
19.2
MONOCYTES_88
19.0
MONOCYTES_89
18.7
MONOCYTES_90
17.4
MONOCYTES_91
16.1
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Non-classical monocyte TPM: 30.1
Samples: 90
Max TPM: 44.9
Min TPM: 20.5
M2_1
44.9
M2_2
41.9
M2_3
41.3
M2_4
40.0
M2_5
39.8
M2_6
39.5
M2_7
39.2
M2_8
39.0
M2_9
38.4
M2_10
36.1
M2_11
36.1
M2_12
36.0
M2_13
36.0
M2_14
35.2
M2_15
35.1
M2_16
34.8
M2_17
34.7
M2_18
34.4
M2_19
34.2
M2_20
33.9
M2_21
33.4
M2_22
32.5
M2_23
32.4
M2_24
32.3
M2_25
32.3
M2_26
32.3
M2_27
32.2
M2_28
31.8
M2_29
31.8
M2_30
31.8
M2_31
31.8
M2_32
31.6
M2_33
31.0
M2_34
30.9
M2_35
30.8
M2_36
30.7
M2_37
30.7
M2_38
30.6
M2_39
30.2
M2_40
30.0
M2_41
29.8
M2_42
29.5
M2_43
29.4
M2_44
29.4
M2_45
29.1
M2_46
29.0
M2_47
28.8
M2_48
28.7
M2_49
28.7
M2_50
28.4
M2_51
28.4
M2_52
28.3
M2_53
28.2
M2_54
28.1
M2_55
27.9
M2_56
27.8
M2_57
27.8
M2_58
27.8
M2_59
27.7
M2_60
27.5
M2_61
27.4
M2_62
27.4
M2_63
27.4
M2_64
27.4
M2_65
27.2
M2_66
27.2
M2_67
26.8
M2_68
26.7
M2_69
26.5
M2_70
26.5
M2_71
26.4
M2_72
26.2
M2_73
25.7
M2_74
25.6
M2_75
25.3
M2_76
25.3
M2_77
24.9
M2_78
24.5
M2_79
24.5
M2_80
24.4
M2_81
24.3
M2_82
24.3
M2_83
24.1
M2_84
24.0
M2_85
23.9
M2_86
23.1
M2_87
22.8
M2_88
22.7
M2_89
22.0
M2_90
20.5
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