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  • BIN1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:167.4 nTPM
HPA Brain:245.5 nTPM
GTEx:167.4 nTPM
FANTOM5:214.0 Scaled Tags Per Million
Pig:131.0 nTPM
Mouse:133.7 nTPM
Allen mouse:19.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.5
Sample id Sample description nTPM
Amygdala
nTPM: 188.0
2814 Male, age 76, right hemisphere 226.4
2695 Female, age 67, right hemisphere 190.0
2517 Female, age 94, left hemisphere 186.5
1987 Female, age 91, left hemisphere 170.1
2514 Male, age 75, right hemisphere 167.1
Basal amygdala
nTPM: 211.8
2827 Female, age 67, right hemisphere 257.3
2685 Female, age 94, left hemisphere 250.2
2110 Male, age 80, left hemisphere 232.0
1955 Male, age 76, both hemispheres 188.0
2243 Female, age 91, right hemisphere 178.6
2609 Male, age 75, right hemisphere 164.5
Central amygdala
nTPM: 204.3
2826 Female, age 94, left hemisphere 238.7
2701 Female, age 91, right hemisphere 218.2
2239 Male, age 80, left hemisphere 212.4
1905 Male, age 76, both hemispheres 207.4
2515 Male, age 75, right hemisphere 144.6
Corticomedial amygdala
nTPM: 175.5
2535 Female, age 67, right hemisphere 246.0
2429 Female, age 94, left hemisphere 207.6
2829 Male, age 80, left hemisphere 181.8
2428 Male, age 75, right hemisphere 148.6
2240 Male, age 76, both hemispheres 142.3
2242 Female, age 91, right hemisphere 127.0
Lateral amygdala
nTPM: 245.5
2256 Male, age 80, left hemisphere 285.7
2534 Female, age 94, left hemisphere 279.7
2830 Female, age 67, right hemisphere 278.4
2255 Female, age 91, right hemisphere 235.5
1883 Male, age 76, both hemispheres 197.4
2516 Male, age 75, right hemisphere 196.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 167.4
Samples: 181

Max nTPM: 368.5
Min nTPM: 71.7
Std nTPM: 56.1
Median nTPM: 158.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 368.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 364.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 334.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 306.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 302.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 290.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 286.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 285.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 283.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 279.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 269.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 265.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 263.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 260.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 249.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 249.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 249.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 245.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 243.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 241.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 234.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 231.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 227.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 227.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 220.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 219.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 219.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 214.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 214.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 212.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 212.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 211.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 210.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 207.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 206.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 205.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 205.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 204.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 204.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 204.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 202.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 200.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 200.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 199.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 199.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 199.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 198.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 197.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 197.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 196.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 196.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 195.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 194.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 194.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 193.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 190.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 190.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 189.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 189.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 188.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 187.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 185.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 185.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 184.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 183.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 183.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 179.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 179.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 178.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 177.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 175.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 175.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 173.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 172.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 171.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 171.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 168.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 167.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 167.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 167.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 165.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 163.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 162.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 162.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 160.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 159.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 159.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 159.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 159.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 158.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 158.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 157.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 156.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 155.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 155.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 154.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 153.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 152.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 151.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 151.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 150.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 150.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 149.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 148.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 147.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 146.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 145.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 144.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 143.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 143.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 143.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 139.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 138.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 138.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 138.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 136.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 136.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 136.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 135.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 135.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 134.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 134.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 133.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 132.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 132.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 132.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 131.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 130.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 128.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 128.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 127.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 126.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 124.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 124.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 123.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 123.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 122.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 120.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 119.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 118.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 118.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 116.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 116.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 114.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 114.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 113.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 113.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 113.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 112.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 110.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 110.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 110.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 109.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 108.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 108.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 106.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 105.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 100.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 100.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 99.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 97.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 93.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 92.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 87.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 83.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 83.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 75.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 71.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

214.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 214.0
FF:10151-102I7 76 years, female 214.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.0
Pig sample Sample description nTPM
Amygdala
nTPM: 131.0
Samples: 4

Max nTPM: 141.8
Min nTPM: 109.3
Sample A Female 140.0
Sample B Female 141.8
Sample C Male 133.0
Sample D Male 109.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 133.6
Samples: 4

Max nTPM: 152.1
Min nTPM: 124.0
Sample A Male 129.5
Sample B Male 128.9
Sample C Female 152.1
Sample D Female 124.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.0
69529292 Antisense, RP_050421_03_H11, Mouse strain C57BL/6J (56 days, male) 19.0

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