BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:190.1 nTPM
HPA Brain:280.5 nTPM
GTEx:190.1 nTPM
FANTOM5:359.6 Scaled Tags Per Million
Macaque:126.1 nTPM
Mouse:203.8 nTPM
Rat:215.7 nTPM
Pig:206.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 280.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 244.0
2586 Male, age 75, left hemisphere 336.7
1830 Male, age 51, unknown 261.5
2411 Female, age 72, unknown 256.6
2666 Male, age 74, left hemisphere 252.7
1833 Male, age 53, unknown 250.3
2019 Male, age 18, unknown 235.3
2828 Female, age 72, unknown 232.8
1870 Female, age 42, unknown 231.5
1827 Male, age 72, unknown 215.7
2219 Male, age 76, both hemispheres 166.5
Dorsal raphe nucleus
nTPM: 178.2
2750 Male, age 76, both hemispheres 262.6
1828 Male, age 53, unknown 175.0
2016 Female, age 72, unknown 166.4
2047 Male, age 72, unknown 145.2
2298 Female, age 72, unknown 141.7
Inferior colliculus
nTPM: 169.6
2849 Male, age 72, unknown 181.6
1890 Male, age 53, unknown 172.1
1848 Female, age 42, unknown 164.7
2097 Female, age 72, unknown 160.2
Median raphe nucleus
nTPM: 153.1
2220 Male, age 76, midline 153.1
Periaquaductal grey, anterior
nTPM: 185.0
1947 Male, age 18, unknown 198.9
1795 Male, age 51, unknown 180.8
2502 Female, age 75, unknown 175.3
Periaquaductal grey, dorsal
nTPM: 143.4
2464 Female, age 72, unknown 196.4
1831 Male, age 72, unknown 159.8
1840 Male, age 53, unknown 126.6
2850 Male, age 76, both hemispheres 90.8
Periaquaductal grey, lateral
nTPM: 150.5
2272 Male, age 74, both hemispheres 168.4
2053 Male, age 18, unknown 167.3
2140 Male, age 76, both hemispheres 115.9
Pretectal area
nTPM: 200.2
2407 Male, age 75, both hemispheres 261.6
2316 Male, age 76, right hemisphere 251.0
1815 Male, age 53, unknown 244.3
2007 Male, age 72, unknown 237.3
1817 Female, age 42, unknown 208.6
2825 Male, age 18, unknown 189.7
1816 Male, age 51, unknown 188.8
1944 Female, age 72, unknown 177.4
2667 Female, age 75, unknown 154.1
2224 Female, age 72, unknown 150.1
2273 Male, age 74, both hemispheres 139.4
Red nucleus
nTPM: 280.5
2823 Male, age 76, right hemisphere 315.4
1904 Male, age 53, unknown 312.0
2584 Male, age 75, left hemisphere 306.1
2503 Female, age 72, unknown 305.5
1865 Male, age 51, unknown 299.2
2785 Male, age 18, unknown 280.9
2227 Male, age 72, unknown 277.1
2588 Male, age 74, left hemisphere 276.7
2769 Male, age 72, unknown 270.6
2725 Female, age 75, unknown 250.1
1821 Female, age 72, unknown 241.3
1954 Female, age 42, unknown 231.5
Substantia nigra
nTPM: 219.4
2583 Male, age 75, right hemisphere 288.3
2590 Female, age 75, unknown 272.6
1851 Male, age 51, unknown 231.0
2409 Female, age 72, unknown 218.4
2665 Male, age 74, both hemispheres 211.7
1916 Female, age 42, unknown 208.0
1889 Female, age 72, unknown 206.0
2699 Male, age 18, unknown 204.9
1941 Male, age 53, unknown 190.0
2241 Male, age 72, unknown 163.6
Superior colliculus
nTPM: 237.0
1995 Male, age 72, unknown 286.0
1913 Female, age 42, unknown 279.1
2668 Female, age 75, unknown 278.7
1895 Male, age 76, right hemisphere 262.2
1796 Male, age 53, unknown 225.3
2664 Male, age 75, both hemispheres 223.6
2261 Male, age 18, unknown 214.6
1839 Male, age 51, unknown 210.7
2587 Male, age 74, left hemisphere 206.7
2087 Female, age 72, unknown 183.1
Ventral tegmental area
nTPM: 193.6
2410 Female, age 72, unknown 244.5
2223 Female, age 72, unknown 196.1
1915 Female, age 42, unknown 195.6
1942 Male, age 51, unknown 182.6
2218 Male, age 76, both hemispheres 175.4
2021 Male, age 53, unknown 167.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 190.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 190.1
Samples: 183

Max nTPM: 759.0
Min nTPM: 81.4
Std nTPM: 82.8
Median nTPM: 172.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 759.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 520.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 461.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 452.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 404.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 386.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 367.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 364.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 349.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 349.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 329.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 359.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 359.6
FF:10158-103A5 76 years, female 359.6

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 126.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 126.1
Samples: 1

Max nTPM: 126.1
Min nTPM: 126.1
Sample A 126.1
Midbrain
nTPM: 88.3
Samples: 1

Max nTPM: 88.3
Min nTPM: 88.3
Sample A 88.3
Superior colliculi
nTPM: 119.3
Samples: 1

Max nTPM: 119.3
Min nTPM: 119.3
Sample A 119.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 206.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 206.1
Samples: 3

Max nTPM: 233.8
Min nTPM: 161.0
Sample A Female 233.8
Sample B Female 161.0
Sample C Male 223.6
Midbrain
nTPM: 201.6
Samples: 3

Max nTPM: 235.9
Min nTPM: 177.9
Sample B Female 235.9
Sample C Male 191.0
Sample D Male 177.9
Periaqueductal gray
nTPM: 183.0
Samples: 3

Max nTPM: 196.3
Min nTPM: 173.2
Sample B Female 196.3
Sample C Male 173.2
Sample D Male 179.5
Superior colliculi
nTPM: 206.7
Samples: 4

Max nTPM: 246.2
Min nTPM: 128.5
Sample A Female 208.3
Sample B Female 128.5
Sample C Male 243.8
Sample D Male 246.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 203.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 203.9
Samples: 4

Max nTPM: 209.5
Min nTPM: 200.2
Sample A 204.6
Sample B 201.1
Sample C 209.5
Sample D 200.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 215.7
Rat sample Sample description nTPM
Midbrain
nTPM: 215.7
Samples: 4

Max nTPM: 222.8
Min nTPM: 210.6
Sample A 216.8
Sample A 222.8
Sample A 210.6
Sample A 212.7

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