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  • PSMB7
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:130.4 nTPM
HPA Brain:114.8 nTPM
GTEx:130.4 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:167.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 112.9
1981 Female, age 72, midline 131.4
2565 Male, age 75, midline 127.8
2048 Male, age 55, midline 109.2
2194 Female, age 79, both hemispheres 99.3
2816 Male, age 47, midline 96.9
Cervical spinal cord, dorsal horn
nTPM: 113.5
2173 Female, age 72, unknown 138.1
2296 Male, age 66, both hemispheres 117.9
2069 Male, age 47, both hemispheres 113.8
2721 Male, age 90, both hemispheres 105.7
2297 Male, age 75, both hemispheres 102.9
1877 Male, age 55, unknown 102.8
Cervical spinal cord, ventral horn
nTPM: 114.8
2809 Male, age 90, both hemispheres 136.9
2480 Male, age 75, both hemispheres 130.2
2098 Female, age 72, unknown 129.2
2068 Male, age 55, unknown 102.7
2295 Male, age 66, both hemispheres 101.0
2820 Female, age 79, both hemispheres 88.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 130.4
Samples: 204

Max nTPM: 199.1
Min nTPM: 77.2
Std nTPM: 24.2
Median nTPM: 127.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 199.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 190.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 186.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 185.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 184.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 182.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 182.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 179.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 179.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 177.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 175.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 172.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 172.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 168.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 168.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 167.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 165.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 165.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 163.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 162.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 162.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 160.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 159.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 158.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 158.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 158.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 157.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 157.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 156.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 156.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 155.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 155.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 155.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 154.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 154.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 154.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 154.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 154.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 154.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 153.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 152.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 152.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 152.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 151.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 150.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 150.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 150.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 147.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 147.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 147.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 147.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 147.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 147.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 146.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 146.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 145.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 144.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 144.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 143.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 142.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 142.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 140.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 140.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 139.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 139.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 139.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 139.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 139.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 138.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 138.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 138.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 137.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 137.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 137.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 137.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 137.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 136.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 136.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 135.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 135.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 135.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 134.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 134.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 132.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 132.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 132.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 131.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 131.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 131.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 130.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 130.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 130.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 129.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 129.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 128.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 128.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 128.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 128.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 127.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 127.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 127.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 127.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 127.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 127.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 126.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 126.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 126.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 126.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 126.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 125.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 125.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 125.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 125.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 124.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 123.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 123.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 122.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 122.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 122.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 122.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 121.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 121.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 120.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 120.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 120.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 120.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 119.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 119.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 119.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 119.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 119.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 119.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 119.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 118.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 118.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 118.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 117.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 117.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 117.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 116.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 115.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 115.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 115.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 115.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 115.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 115.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 114.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 114.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 114.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 114.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 113.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 113.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 112.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 112.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 112.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 112.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 111.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 111.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 110.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 110.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 109.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 109.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 109.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 107.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 107.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 106.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 104.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 104.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 104.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 103.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 103.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 102.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 102.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 102.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 102.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 101.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 101.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 100.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 100.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 99.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 99.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 98.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 98.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 96.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 94.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 93.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 93.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 93.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 91.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 91.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 91.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 90.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 90.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 90.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 86.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 85.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 81.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 77.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.6
FF:10181-103D1 60 years, female 121.8
FF:10159-103A6 76 years, female 79.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 143.2
Samples: 4

Max nTPM: 149.6
Min nTPM: 137.6
Sample A Female 137.6
Sample B Female 137.8
Sample C Male 149.6
Sample D Male 147.8
Ventral spinal cord
nTPM: 167.6
Samples: 4

Max nTPM: 175.9
Min nTPM: 156.0
Sample A Female 156.0
Sample B Female 175.9
Sample C Male 173.2
Sample D Male 165.1

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