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  • PSMB7
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:148.3 nTPM
HPA Brain:109.3 nTPM
GTEx:148.3 nTPM
FANTOM5:122.8 Scaled Tags Per Million
Pig:93.4 nTPM
Mouse:260.0 nTPM
Allen mouse:14.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.3
Sample id Sample description nTPM
Amygdala
nTPM: 109.3
2695 Female, age 67, right hemisphere 120.3
2514 Male, age 75, right hemisphere 113.1
1987 Female, age 91, left hemisphere 110.8
2517 Female, age 94, left hemisphere 106.2
2814 Male, age 76, right hemisphere 96.2
Basal amygdala
nTPM: 98.2
2609 Male, age 75, right hemisphere 125.6
2243 Female, age 91, right hemisphere 115.0
2110 Male, age 80, left hemisphere 98.6
2685 Female, age 94, left hemisphere 92.2
1955 Male, age 76, both hemispheres 85.1
2827 Female, age 67, right hemisphere 72.4
Central amygdala
nTPM: 103.1
2515 Male, age 75, right hemisphere 122.4
2239 Male, age 80, left hemisphere 100.8
2701 Female, age 91, right hemisphere 99.6
2826 Female, age 94, left hemisphere 98.9
1905 Male, age 76, both hemispheres 93.9
Corticomedial amygdala
nTPM: 100.5
2428 Male, age 75, right hemisphere 118.3
2829 Male, age 80, left hemisphere 116.0
2429 Female, age 94, left hemisphere 104.9
2242 Female, age 91, right hemisphere 104.5
2240 Male, age 76, both hemispheres 85.1
2535 Female, age 67, right hemisphere 74.2
Lateral amygdala
nTPM: 91.3
2516 Male, age 75, right hemisphere 112.3
1883 Male, age 76, both hemispheres 98.5
2255 Female, age 91, right hemisphere 88.8
2534 Female, age 94, left hemisphere 87.8
2256 Male, age 80, left hemisphere 82.5
2830 Female, age 67, right hemisphere 77.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.3
Samples: 181

Max nTPM: 390.7
Min nTPM: 81.5
Std nTPM: 47.4
Median nTPM: 139.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 390.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 388.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 323.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 289.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 284.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 261.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 242.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 234.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 226.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 225.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 219.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 215.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 214.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 210.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 208.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 206.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 205.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 202.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 202.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 201.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 201.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 200.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 189.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 187.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 186.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 185.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 181.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 180.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 180.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 178.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 178.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 176.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 175.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 173.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 172.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 172.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 172.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 171.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 171.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 170.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 168.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 167.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 166.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 165.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 165.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 164.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 164.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 164.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 161.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 161.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 161.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 160.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 160.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 159.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 159.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 157.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 157.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 157.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 155.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 154.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 154.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 154.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 153.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 153.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 153.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 153.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 153.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 153.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 152.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 152.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 151.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 151.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 149.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 149.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 149.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 148.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 148.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 146.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 146.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 145.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 145.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 144.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 143.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 143.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 142.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 142.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 140.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 139.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 139.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 138.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 138.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 138.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 137.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 137.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 136.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 136.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 135.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 135.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 135.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 135.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 134.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 134.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 133.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 132.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 130.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 130.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 129.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 129.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 128.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 128.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 126.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 126.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 124.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 124.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 123.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 122.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 121.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 121.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 120.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 120.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 120.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 120.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 118.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 118.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 117.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 114.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 114.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 114.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 113.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 112.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 111.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 111.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 109.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 108.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 107.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 107.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 106.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 105.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 105.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 105.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 105.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 105.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 105.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 104.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 104.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 104.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 103.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 103.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 102.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 101.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 98.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 98.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 98.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 97.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 96.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 93.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 88.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 84.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 81.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

122.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 122.8
FF:10151-102I7 76 years, female 122.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.4
Pig sample Sample description nTPM
Amygdala
nTPM: 93.5
Samples: 4

Max nTPM: 130.9
Min nTPM: 76.2
Sample A Female 130.9
Sample B Female 85.0
Sample C Male 76.2
Sample D Male 81.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 260.0
Samples: 4

Max nTPM: 278.7
Min nTPM: 245.9
Sample A Male 265.1
Sample B Male 278.7
Sample C Female 245.9
Sample D Female 250.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.9
69014818 Antisense, RP_050310_01_G07, Mouse strain C57BL/6J (56 days, male) 14.9

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