We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS6
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS6
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:663.9 nTPM
GTEx:663.9 nTPM
FANTOM5:176.2 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

663.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 663.9
Samples: 105

Max nTPM: 861.3
Min nTPM: 465.4
Std nTPM: 90.2
Median nTPM:
379_1 60 years, male 861.3
17_1 71 years, male 837.4
389_1 86 years, female 836.6
126_1 63 years, male 824.6
321_1 62 years, female 822.3
35_1 74 years, female 820.1
120_1 70 years, female 807.2
246_1 77 years, male 804.1
4_1 88 years, female 800.9
347_1 72 years, male 800.6
495_1 57 years, female 800.1
396_1 62 years, male 792.4
384_1 83 years, male 790.7
307_1 66 years, female 782.3
2_1 77 years, female 773.4
322_1 76 years, male 764.1
308_1 70 years, female 761.2
189_1 76 years, male 759.6
447_1 81 years, male 757.1
254_1 77 years, female 752.9
376_1 75 years, female 750.3
153_1 70 years, female 748.4
375_1 74 years, female 743.1
315_1 62 years, female 741.8
237_1 82 years, male 737.0
139_1 64 years, female 735.2
386_1 76 years, male 733.5
452_1 88 years, female 731.0
137_1 83 years, male 723.0
526_1 61 years, male 720.4
265_1 87 years, male 715.1
405_1 91 years, male 714.6
320_1 89 years, female 714.2
145_1 84 years, male 710.9
415_1 77 years, female 707.1
266_1 85 years, male 707.0
119_1 70 years, female 705.6
6_1 73 years, female 701.5
377_1 82 years, female 698.1
414_1 84 years, female 695.4
499_1 55 years, female 690.1
518_1 75 years, female 687.3
162_1 79 years, female 683.0
117_1 61 years, male 681.3
41_1 94 years, female 681.0
229_1 69 years, female 673.4
218_1 71 years, female 670.7
319_1 81 years, male 670.4
18_1 88 years, male 667.7
404_1 82 years, female 666.1
355_1 70 years, female 663.9
109_1 81 years, female 663.6
142_1 61 years, female 660.9
394_1 75 years, female 658.8
317_1 60 years, male 656.5
316_1 62 years, male 655.1
468_1 89 years, male 650.1
243_1 75 years, male 646.1
348_1 84 years, male 640.1
311_1 78 years, male 639.3
99_1 64 years, male 636.3
177_1 74 years, male 636.3
173_1 67 years, male 630.2
217_1 76 years, male 626.0
349_1 83 years, male 625.1
501_1 88 years, male 625.1
251_1 78 years, male 624.5
42_1 85 years, male 624.4
115_1 83 years, male 622.7
466_1 57 years, female 619.1
351_1 91 years, male 617.7
335_1 73 years, female 617.5
354_1 81 years, female 608.4
491_1 89 years, female 607.2
32_1 67 years, male 604.0
324_1 76 years, male 599.5
314_1 67 years, male 596.6
81_1 67 years, male 596.4
406_1 79 years, male 592.1
352_1 62 years, male 591.5
313_1 79 years, female 588.0
172_1 72 years, female 584.1
503_1 68 years, male 583.0
425_1 59 years, female 580.5
288_1 66 years, female 574.4
295_1 61 years, female 572.6
353_1 82 years, female 566.2
264_1 73 years, female 564.3
163_1 78 years, male 563.4
291_1 76 years, male 563.3
286_1 68 years, female 561.4
318_1 68 years, male 560.2
350_1 84 years, female 559.3
89_1 63 years, male 555.9
517_1 88 years, male 550.0
480_1 63 years, male 544.6
293_1 68 years, female 544.2
9_1 66 years, female 529.3
292_1 71 years, male 529.2
149_1 88 years, male 527.1
413_1 59 years, female 525.2
490_1 67 years, female 524.1
356_1 87 years, female 501.1
506_1 65 years, male 501.0
43_1 64 years, female 465.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 176.2
FF:10030-101E3 24-65 years, mixed 176.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo