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  • UQCC2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:77.7 nTPM
HPA Brain:44.1 nTPM
GTEx:77.7 nTPM
FANTOM5:46.3 Scaled Tags Per Million
Pig:24.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 44.0
1981 Female, age 72, midline 52.2
2565 Male, age 75, midline 43.8
2816 Male, age 47, midline 42.6
2194 Female, age 79, both hemispheres 42.2
2048 Male, age 55, midline 39.0
Cervical spinal cord, dorsal horn
nTPM: 43.5
2296 Male, age 66, both hemispheres 51.1
2173 Female, age 72, unknown 49.8
2069 Male, age 47, both hemispheres 44.3
2297 Male, age 75, both hemispheres 39.8
1877 Male, age 55, unknown 38.1
2721 Male, age 90, both hemispheres 38.0
Cervical spinal cord, ventral horn
nTPM: 44.1
2098 Female, age 72, unknown 50.6
2480 Male, age 75, both hemispheres 48.6
2809 Male, age 90, both hemispheres 44.4
2068 Male, age 55, unknown 41.8
2820 Female, age 79, both hemispheres 39.9
2295 Male, age 66, both hemispheres 39.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 77.7
Samples: 204

Max nTPM: 173.8
Min nTPM: 32.0
Std nTPM: 22.9
Median nTPM: 73.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 173.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 150.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 145.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 139.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 131.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 130.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 126.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 126.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 124.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 122.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 120.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 118.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 117.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 116.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 115.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 114.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 112.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 112.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 111.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 110.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 110.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 109.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 108.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 104.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 102.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 102.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 101.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 101.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 99.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 99.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 98.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 98.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 98.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 98.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 97.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 97.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 97.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 96.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 94.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 93.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 93.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 92.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 92.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 91.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 91.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 90.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 90.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 90.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 90.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 89.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 89.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 89.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 89.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 88.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 87.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 87.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 87.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 86.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 85.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 85.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 85.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 84.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 83.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 83.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 83.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 82.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 82.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 82.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 81.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 81.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 81.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 80.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 80.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 80.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 80.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 80.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 80.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 79.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 79.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 78.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 78.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 78.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 78.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 78.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 78.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 77.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 77.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 77.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 76.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 76.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 76.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 75.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 75.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 75.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 74.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 74.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 74.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 73.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 73.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 73.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 73.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 73.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 72.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 72.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 72.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 72.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 72.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 72.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 71.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 71.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 71.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 71.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 71.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 71.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 70.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 70.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 70.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 69.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 69.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 69.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 68.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 68.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 68.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 68.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 68.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 68.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 67.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 67.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 67.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 67.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 66.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 66.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 66.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 65.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 65.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 65.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 65.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 65.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 64.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 64.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 64.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 64.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 64.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 64.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 64.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 64.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 63.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 63.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 63.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 63.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 62.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 62.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 62.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 62.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 61.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 61.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 61.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 60.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 60.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 59.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 59.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 59.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 57.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 57.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 56.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 56.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 56.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 56.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 55.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 54.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 54.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 53.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 52.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 52.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 52.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 52.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 52.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 51.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 51.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 50.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 49.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 49.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 49.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 49.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 48.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 48.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 47.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 47.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 46.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 45.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 44.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 42.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 41.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 40.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 39.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 38.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 38.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 32.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 46.3
FF:10181-103D1 60 years, female 62.5
FF:10159-103A6 76 years, female 30.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.4
Samples: 4

Max nTPM: 28.2
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 22.7
Sample C Male 28.2
Sample D Male 22.4
Ventral spinal cord
nTPM: 24.5
Samples: 4

Max nTPM: 27.9
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 24.7
Sample C Male 27.9
Sample D Male 24.4

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