A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
72.3
nTPM
Monaco:
251.9
nTPM
Schmiedel:
290.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.3
HPA sample
nTPM
Classical monocyte nTPM: 20.7
Samples: 6
Max nTPM: 27.8
Min nTPM: 15.0
P10809_1003
15.0
P10809_1020
16.8
P10809_1039
21.5
P10809_1058
22.7
P10809_1080
20.2
P10809_1107
27.8
Intermediate monocyte nTPM: 38.9
Samples: 6
Max nTPM: 63.8
Min nTPM: 25.6
P10809_1004
63.8
P10809_1023
46.4
P10809_1042
29.8
P10809_1061
27.7
P10809_1081
25.6
P10809_1108
40.3
Non-classical monocyte nTPM: 72.3
Samples: 5
Max nTPM: 84.3
Min nTPM: 58.6
P10809_1005
84.3
P10809_1053
58.6
P10809_1072
79.0
P10809_1082
68.7
P10809_1109
70.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
251.9
Monaco sample
nTPM
Classical monocyte nTPM: 84.9
Samples: 4
Max nTPM: 111.5
Min nTPM: 55.6
RHH5313_R3680
111.5
RHH5221_R3593
55.6
RHH5250_R3622
103.2
RHH5279_R3651
69.4
Intermediate monocyte nTPM: 165.8
Samples: 4
Max nTPM: 212.3
Min nTPM: 125.5
RHH5314_R3681
212.3
RHH5222_R3594
125.5
RHH5251_R3623
169.5
RHH5280_R3652
156.0
Non-classical monocyte nTPM: 251.9
Samples: 4
Max nTPM: 305.5
Min nTPM: 208.5
RHH5315_R3682
305.5
RHH5223_R3595
233.5
RHH5252_R3624
208.5
RHH5281_R3653
259.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
290.7
Schmiedel sample id
TPM
Classical monocyte TPM: 62.0
Samples: 91
Max TPM: 153.9
Min TPM: 20.4
MONOCYTES_1
153.9
MONOCYTES_2
144.1
MONOCYTES_3
131.3
MONOCYTES_4
105.0
MONOCYTES_5
102.3
MONOCYTES_6
100.7
MONOCYTES_7
100.7
MONOCYTES_8
97.9
MONOCYTES_9
97.1
MONOCYTES_10
96.6
MONOCYTES_11
95.0
MONOCYTES_12
90.0
MONOCYTES_13
87.1
MONOCYTES_14
84.8
MONOCYTES_15
81.7
MONOCYTES_16
79.9
MONOCYTES_17
78.5
MONOCYTES_18
75.9
MONOCYTES_19
75.2
MONOCYTES_20
73.3
MONOCYTES_21
72.4
MONOCYTES_22
71.6
MONOCYTES_23
70.5
MONOCYTES_24
70.0
MONOCYTES_25
68.4
MONOCYTES_26
67.9
MONOCYTES_27
67.7
MONOCYTES_28
66.3
MONOCYTES_29
65.7
MONOCYTES_30
65.3
MONOCYTES_31
64.6
MONOCYTES_32
64.3
MONOCYTES_33
63.8
MONOCYTES_34
62.9
MONOCYTES_35
62.9
MONOCYTES_36
62.4
MONOCYTES_37
61.1
MONOCYTES_38
60.8
MONOCYTES_39
60.4
MONOCYTES_40
59.0
MONOCYTES_41
58.5
MONOCYTES_42
58.3
MONOCYTES_43
58.0
MONOCYTES_44
57.0
MONOCYTES_45
56.5
MONOCYTES_46
56.4
MONOCYTES_47
56.2
MONOCYTES_48
55.4
MONOCYTES_49
55.3
MONOCYTES_50
54.5
MONOCYTES_51
53.7
MONOCYTES_52
53.7
MONOCYTES_53
53.6
MONOCYTES_54
53.2
MONOCYTES_55
53.0
MONOCYTES_56
51.6
MONOCYTES_57
50.7
MONOCYTES_58
50.2
MONOCYTES_59
49.6
MONOCYTES_60
49.5
MONOCYTES_61
49.4
MONOCYTES_62
49.2
MONOCYTES_63
49.0
MONOCYTES_64
47.7
MONOCYTES_65
47.5
MONOCYTES_66
47.4
MONOCYTES_67
47.3
MONOCYTES_68
46.8
MONOCYTES_69
46.2
MONOCYTES_70
46.1
MONOCYTES_71
46.0
MONOCYTES_72
45.7
MONOCYTES_73
45.5
MONOCYTES_74
43.8
MONOCYTES_75
43.3
MONOCYTES_76
42.8
MONOCYTES_77
42.7
MONOCYTES_78
41.5
MONOCYTES_79
41.0
MONOCYTES_80
40.4
MONOCYTES_81
40.2
MONOCYTES_82
39.4
MONOCYTES_83
39.2
MONOCYTES_84
38.8
MONOCYTES_85
37.2
MONOCYTES_86
37.1
MONOCYTES_87
36.8
MONOCYTES_88
36.3
MONOCYTES_89
30.1
MONOCYTES_90
29.3
MONOCYTES_91
20.4
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Non-classical monocyte TPM: 290.7
Samples: 90
Max TPM: 618.8
Min TPM: 138.4
M2_1
618.8
M2_2
511.6
M2_3
474.2
M2_4
461.9
M2_5
458.8
M2_6
452.3
M2_7
406.0
M2_8
403.6
M2_9
403.1
M2_10
387.3
M2_11
378.5
M2_12
377.3
M2_13
372.6
M2_14
368.5
M2_15
364.5
M2_16
362.5
M2_17
360.2
M2_18
358.1
M2_19
358.1
M2_20
350.6
M2_21
350.4
M2_22
339.7
M2_23
335.7
M2_24
330.8
M2_25
330.0
M2_26
329.3
M2_27
328.1
M2_28
322.6
M2_29
322.3
M2_30
321.5
M2_31
321.0
M2_32
317.7
M2_33
313.4
M2_34
309.4
M2_35
307.7
M2_36
307.1
M2_37
306.5
M2_38
304.9
M2_39
295.6
M2_40
295.1
M2_41
292.0
M2_42
291.6
M2_43
289.2
M2_44
276.4
M2_45
275.2
M2_46
273.7
M2_47
267.7
M2_48
267.6
M2_49
265.4
M2_50
265.2
M2_51
264.7
M2_52
264.0
M2_53
262.9
M2_54
262.1
M2_55
261.5
M2_56
260.1
M2_57
259.5
M2_58
254.7
M2_59
253.7
M2_60
249.3
M2_61
243.0
M2_62
237.1
M2_63
233.2
M2_64
232.5
M2_65
230.5
M2_66
229.8
M2_67
229.6
M2_68
224.0
M2_69
222.0
M2_70
221.6
M2_71
218.5
M2_72
213.8
M2_73
211.7
M2_74
211.3
M2_75
208.4
M2_76
204.9
M2_77
204.5
M2_78
201.7
M2_79
198.1
M2_80
196.0
M2_81
195.6
M2_82
193.0
M2_83
190.8
M2_84
190.3
M2_85
189.7
M2_86
189.6
M2_87
187.2
M2_88
186.6
M2_89
159.1
M2_90
138.4
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