A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.9
nTPM
Monaco:
19.0
nTPM
Schmiedel:
19.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.9
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 3.8
Min nTPM: 0.8
P10809_1003
3.8
P10809_1020
3.0
P10809_1039
0.8
P10809_1058
1.2
P10809_1080
2.7
P10809_1107
1.9
Intermediate monocyte nTPM: 2.9
Samples: 6
Max nTPM: 5.8
Min nTPM: 1.0
P10809_1004
5.8
P10809_1023
3.2
P10809_1042
2.1
P10809_1061
1.0
P10809_1081
2.5
P10809_1108
2.7
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 4.1
Min nTPM: 0.0
P10809_1005
4.1
P10809_1053
2.2
P10809_1072
0.0
P10809_1082
1.5
P10809_1109
2.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.0
Monaco sample
nTPM
Classical monocyte nTPM: 10.7
Samples: 4
Max nTPM: 13.7
Min nTPM: 7.4
RHH5313_R3680
10.2
RHH5221_R3593
7.4
RHH5250_R3622
11.6
RHH5279_R3651
13.7
Intermediate monocyte nTPM: 16.5
Samples: 4
Max nTPM: 24.5
Min nTPM: 8.7
RHH5314_R3681
10.4
RHH5222_R3594
8.7
RHH5251_R3623
24.5
RHH5280_R3652
22.5
Non-classical monocyte nTPM: 19.0
Samples: 4
Max nTPM: 25.1
Min nTPM: 4.8
RHH5315_R3682
21.8
RHH5223_R3595
4.8
RHH5252_R3624
25.1
RHH5281_R3653
24.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.3
Schmiedel sample id
TPM
Classical monocyte TPM: 13.5
Samples: 91
Max TPM: 18.2
Min TPM: 8.9
MONOCYTES_1
18.2
MONOCYTES_2
17.1
MONOCYTES_3
16.7
MONOCYTES_4
16.6
MONOCYTES_5
16.4
MONOCYTES_6
16.2
MONOCYTES_7
16.1
MONOCYTES_8
16.0
MONOCYTES_9
15.7
MONOCYTES_10
15.4
MONOCYTES_11
15.2
MONOCYTES_12
15.2
MONOCYTES_13
15.1
MONOCYTES_14
15.1
MONOCYTES_15
14.9
MONOCYTES_16
14.8
MONOCYTES_17
14.8
MONOCYTES_18
14.8
MONOCYTES_19
14.8
MONOCYTES_20
14.7
MONOCYTES_21
14.7
MONOCYTES_22
14.7
MONOCYTES_23
14.7
MONOCYTES_24
14.6
MONOCYTES_25
14.6
MONOCYTES_26
14.4
MONOCYTES_27
14.4
MONOCYTES_28
14.3
MONOCYTES_29
14.3
MONOCYTES_30
14.3
MONOCYTES_31
14.3
MONOCYTES_32
14.3
MONOCYTES_33
14.2
MONOCYTES_34
14.2
MONOCYTES_35
14.1
MONOCYTES_36
14.0
MONOCYTES_37
13.9
MONOCYTES_38
13.9
MONOCYTES_39
13.9
MONOCYTES_40
13.8
MONOCYTES_41
13.8
MONOCYTES_42
13.7
MONOCYTES_43
13.6
MONOCYTES_44
13.5
MONOCYTES_45
13.5
MONOCYTES_46
13.5
MONOCYTES_47
13.5
MONOCYTES_48
13.4
MONOCYTES_49
13.4
MONOCYTES_50
13.4
MONOCYTES_51
13.3
MONOCYTES_52
13.3
MONOCYTES_53
13.3
MONOCYTES_54
13.2
MONOCYTES_55
13.2
MONOCYTES_56
13.2
MONOCYTES_57
13.2
MONOCYTES_58
13.2
MONOCYTES_59
13.1
MONOCYTES_60
13.1
MONOCYTES_61
12.9
MONOCYTES_62
12.9
MONOCYTES_63
12.7
MONOCYTES_64
12.7
MONOCYTES_65
12.7
MONOCYTES_66
12.6
MONOCYTES_67
12.5
MONOCYTES_68
12.5
MONOCYTES_69
12.4
MONOCYTES_70
12.4
MONOCYTES_71
12.4
MONOCYTES_72
12.3
MONOCYTES_73
12.3
MONOCYTES_74
12.3
MONOCYTES_75
12.2
MONOCYTES_76
12.1
MONOCYTES_77
12.0
MONOCYTES_78
12.0
MONOCYTES_79
11.9
MONOCYTES_80
11.7
MONOCYTES_81
11.5
MONOCYTES_82
11.4
MONOCYTES_83
11.3
MONOCYTES_84
11.0
MONOCYTES_85
10.9
MONOCYTES_86
10.9
MONOCYTES_87
10.8
MONOCYTES_88
10.5
MONOCYTES_89
10.5
MONOCYTES_90
10.0
MONOCYTES_91
8.9
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Non-classical monocyte TPM: 19.3
Samples: 90
Max TPM: 26.4
Min TPM: 13.4
M2_1
26.4
M2_2
25.0
M2_3
23.1
M2_4
22.7
M2_5
22.7
M2_6
22.0
M2_7
21.9
M2_8
21.8
M2_9
21.8
M2_10
21.7
M2_11
21.5
M2_12
21.5
M2_13
21.5
M2_14
21.4
M2_15
21.3
M2_16
21.3
M2_17
21.2
M2_18
21.1
M2_19
21.0
M2_20
21.0
M2_21
20.9
M2_22
20.8
M2_23
20.8
M2_24
20.7
M2_25
20.7
M2_26
20.6
M2_27
20.6
M2_28
20.6
M2_29
20.4
M2_30
20.4
M2_31
20.4
M2_32
20.3
M2_33
20.3
M2_34
20.3
M2_35
20.2
M2_36
20.2
M2_37
20.0
M2_38
19.9
M2_39
19.8
M2_40
19.8
M2_41
19.7
M2_42
19.7
M2_43
19.7
M2_44
19.7
M2_45
19.4
M2_46
19.4
M2_47
19.4
M2_48
19.3
M2_49
19.2
M2_50
19.2
M2_51
19.1
M2_52
19.1
M2_53
19.0
M2_54
19.0
M2_55
19.0
M2_56
18.9
M2_57
18.8
M2_58
18.8
M2_59
18.7
M2_60
18.7
M2_61
18.6
M2_62
18.4
M2_63
18.3
M2_64
18.3
M2_65
18.2
M2_66
17.7
M2_67
17.6
M2_68
17.5
M2_69
17.3
M2_70
17.2
M2_71
17.2
M2_72
17.1
M2_73
17.1
M2_74
17.1
M2_75
17.1
M2_76
17.0
M2_77
16.6
M2_78
16.6
M2_79
16.6
M2_80
16.5
M2_81
16.4
M2_82
15.9
M2_83
15.8
M2_84
15.8
M2_85
15.7
M2_86
15.6
M2_87
15.4
M2_88
15.1
M2_89
14.3
M2_90
13.4
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