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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:146.4 nTPM
GTEx:146.4 nTPM
FANTOM5:577.7 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 146.4
Samples: 105

Max nTPM: 506.9
Min nTPM: 20.4
Std nTPM: 100.1
Median nTPM:
356_1 87 years, female 506.9
352_1 62 years, male 428.7
319_1 81 years, male 417.7
353_1 82 years, female 415.0
351_1 91 years, male 381.4
354_1 81 years, female 363.4
218_1 71 years, female 335.6
452_1 88 years, female 330.4
320_1 89 years, female 325.3
163_1 78 years, male 318.2
355_1 70 years, female 280.4
506_1 65 years, male 279.6
349_1 83 years, male 271.9
321_1 62 years, female 269.8
350_1 84 years, female 253.3
377_1 82 years, female 245.8
295_1 61 years, female 237.9
386_1 76 years, male 228.4
394_1 75 years, female 223.6
293_1 68 years, female 214.7
376_1 75 years, female 213.8
243_1 75 years, male 211.8
172_1 72 years, female 203.5
322_1 76 years, male 199.5
503_1 68 years, male 195.3
406_1 79 years, male 192.4
99_1 64 years, male 190.4
292_1 71 years, male 184.0
6_1 73 years, female 175.2
4_1 88 years, female 171.6
318_1 68 years, male 167.9
335_1 73 years, female 167.5
251_1 78 years, male 165.6
384_1 83 years, male 165.1
177_1 74 years, male 163.4
379_1 60 years, male 159.7
2_1 77 years, female 157.8
173_1 67 years, male 157.7
286_1 68 years, female 157.6
35_1 74 years, female 150.6
115_1 83 years, male 149.6
447_1 81 years, male 147.5
517_1 88 years, male 145.2
17_1 71 years, male 135.1
317_1 60 years, male 135.1
404_1 82 years, female 134.2
237_1 82 years, male 129.8
189_1 76 years, male 127.6
480_1 63 years, male 127.2
348_1 84 years, male 126.4
389_1 86 years, female 126.0
375_1 74 years, female 123.3
137_1 83 years, male 122.0
425_1 59 years, female 121.3
316_1 62 years, male 119.4
264_1 73 years, female 117.3
145_1 84 years, male 114.8
405_1 91 years, male 113.6
396_1 62 years, male 112.1
526_1 61 years, male 110.0
18_1 88 years, male 107.0
153_1 70 years, female 104.3
291_1 76 years, male 101.4
120_1 70 years, female 101.2
42_1 85 years, male 96.4
347_1 72 years, male 91.1
109_1 81 years, female 89.7
126_1 63 years, male 87.2
518_1 75 years, female 87.2
9_1 66 years, female 86.7
468_1 89 years, male 84.2
41_1 94 years, female 83.2
229_1 69 years, female 82.2
265_1 87 years, male 78.9
246_1 77 years, male 78.0
217_1 76 years, male 76.7
311_1 78 years, male 76.2
254_1 77 years, female 75.1
266_1 85 years, male 71.5
413_1 59 years, female 68.9
314_1 67 years, male 62.4
315_1 62 years, female 61.8
117_1 61 years, male 60.6
162_1 79 years, female 59.3
119_1 70 years, female 59.2
139_1 64 years, female 59.0
307_1 66 years, female 58.9
313_1 79 years, female 58.8
499_1 55 years, female 57.0
324_1 76 years, male 56.4
288_1 66 years, female 56.3
142_1 61 years, female 53.3
308_1 70 years, female 51.0
414_1 84 years, female 50.9
490_1 67 years, female 50.0
81_1 67 years, male 45.7
491_1 89 years, female 42.8
466_1 57 years, female 41.6
32_1 67 years, male 39.6
501_1 88 years, male 39.4
43_1 64 years, female 38.6
415_1 77 years, female 38.6
495_1 57 years, female 36.5
89_1 63 years, male 35.0
149_1 88 years, male 20.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

577.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 577.7
FF:10030-101E3 24-65 years, mixed 577.7

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