We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HADHB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • HADHB
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:135.4 nTPM
HPA Brain:147.6 nTPM
GTEx:135.4 nTPM
FANTOM5:264.8 Scaled Tags Per Million
Pig:160.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 127.0
1981 Female, age 72, midline 174.9
2048 Male, age 55, midline 158.9
2816 Male, age 47, midline 105.6
2194 Female, age 79, both hemispheres 103.4
2565 Male, age 75, midline 92.3
Cervical spinal cord, dorsal horn
nTPM: 147.6
2173 Female, age 72, unknown 220.1
2296 Male, age 66, both hemispheres 164.9
2069 Male, age 47, both hemispheres 150.5
2721 Male, age 90, both hemispheres 124.5
1877 Male, age 55, unknown 121.5
2297 Male, age 75, both hemispheres 104.2
Cervical spinal cord, ventral horn
nTPM: 135.3
2098 Female, age 72, unknown 207.6
2809 Male, age 90, both hemispheres 144.8
2295 Male, age 66, both hemispheres 137.0
2480 Male, age 75, both hemispheres 115.8
2068 Male, age 55, unknown 111.3
2820 Female, age 79, both hemispheres 95.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 135.4
Samples: 204

Max nTPM: 228.9
Min nTPM: 70.2
Std nTPM: 28.7
Median nTPM: 133.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 228.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 225.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 213.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 210.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 199.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 198.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 197.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 193.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 190.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 190.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 187.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 179.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 178.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 178.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 177.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 177.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 177.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 176.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 176.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 174.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 173.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 172.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 171.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 171.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 170.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 170.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 170.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 167.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 167.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 166.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 166.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 165.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 164.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 163.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 162.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 162.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 161.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 161.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 161.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 159.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 157.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 156.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 155.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 155.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 154.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 154.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 153.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 152.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 152.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 152.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 151.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 151.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 150.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 150.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 150.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 149.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 149.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 149.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 149.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 148.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 148.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 148.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 148.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 147.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 146.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 145.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 144.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 144.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 143.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 143.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 143.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 142.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 142.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 142.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 142.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 141.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 141.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 141.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 141.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 141.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 140.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 140.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 138.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 138.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 138.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 137.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 137.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 136.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 136.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 136.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 135.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 135.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 135.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 134.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 134.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 134.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 134.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 134.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 133.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 133.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 133.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 133.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 132.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 132.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 132.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 131.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 131.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 131.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 131.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 131.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 130.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 130.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 130.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 130.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 129.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 129.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 128.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 128.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 127.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 127.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 127.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 127.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 127.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 126.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 126.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 126.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 124.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 124.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 123.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 123.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 122.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 122.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 122.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 122.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 122.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 121.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 121.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 121.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 120.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 120.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 119.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 119.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 119.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 118.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 117.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 117.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 117.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 116.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 116.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 116.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 116.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 115.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 114.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 114.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 113.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 112.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 112.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 111.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 111.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 111.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 111.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 111.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 110.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 110.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 110.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 110.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 109.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 109.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 108.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 108.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 108.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 107.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 105.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 105.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 104.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 104.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 103.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 102.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 101.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 100.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 100.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 100.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 99.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 99.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 98.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 98.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 97.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 97.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 96.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 95.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 91.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 91.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 89.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 89.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 85.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 81.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 81.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 76.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 70.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 70.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 264.8
FF:10181-103D1 60 years, female 271.3
FF:10159-103A6 76 years, female 258.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 117.2
Samples: 4

Max nTPM: 140.2
Min nTPM: 104.5
Sample A Female 114.7
Sample B Female 140.2
Sample C Male 109.2
Sample D Male 104.5
Ventral spinal cord
nTPM: 160.8
Samples: 4

Max nTPM: 201.3
Min nTPM: 144.3
Sample A Female 149.6
Sample B Female 201.3
Sample C Male 147.9
Sample D Male 144.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo