We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RAB1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RAB1A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:76.6 nTPM
HPA Brain:82.0 nTPM
GTEx:76.6 nTPM
FANTOM5:269.0 Scaled Tags Per Million
Pig:78.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.5
1981 Female, age 72, midline 83.1
2048 Male, age 55, midline 74.7
2194 Female, age 79, both hemispheres 71.7
2816 Male, age 47, midline 65.5
2565 Male, age 75, midline 62.6
Cervical spinal cord, dorsal horn
nTPM: 82.0
2173 Female, age 72, unknown 91.0
2069 Male, age 47, both hemispheres 88.4
2296 Male, age 66, both hemispheres 81.8
2297 Male, age 75, both hemispheres 80.8
1877 Male, age 55, unknown 77.6
2721 Male, age 90, both hemispheres 72.3
Cervical spinal cord, ventral horn
nTPM: 76.4
2098 Female, age 72, unknown 90.9
2809 Male, age 90, both hemispheres 83.9
2480 Male, age 75, both hemispheres 78.6
2295 Male, age 66, both hemispheres 77.5
2820 Female, age 79, both hemispheres 64.7
2068 Male, age 55, unknown 63.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 76.6
Samples: 204

Max nTPM: 129.5
Min nTPM: 49.9
Std nTPM: 12.5
Median nTPM: 75.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 129.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 125.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 120.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 114.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 104.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 103.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 103.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 102.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 102.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 101.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 98.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 98.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 96.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 96.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 95.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 95.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 95.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 91.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 91.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 91.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 91.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 91.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 90.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 89.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 88.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 88.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 88.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 88.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 88.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 87.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 87.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 87.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 87.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 87.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 87.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 86.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 86.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 85.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 85.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 85.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 85.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 85.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 84.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 84.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 83.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 83.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 83.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 83.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 82.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 82.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 82.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 82.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 82.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 82.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 82.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 82.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 81.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 81.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 81.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 81.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 81.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 81.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 81.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 81.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 81.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 80.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 80.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 80.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 80.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 79.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 79.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 78.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 78.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 78.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 78.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 78.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 78.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 78.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 78.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 78.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 78.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 77.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 77.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 77.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 77.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 77.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 76.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 76.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 76.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 76.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 76.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 76.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 76.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 76.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 75.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 75.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 75.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 75.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 75.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 75.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 75.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 74.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 74.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 74.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 74.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 74.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 74.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 74.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 73.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 73.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 73.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 73.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 73.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 73.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 73.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 72.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 72.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 72.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 72.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 72.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 72.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 72.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 72.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 72.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 72.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 71.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 71.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 71.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 71.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 71.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 71.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 71.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 71.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 70.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 70.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 70.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 69.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 69.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 69.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 69.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 69.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 69.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 69.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 69.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 69.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 69.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 69.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 69.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 68.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 68.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 68.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 68.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 68.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 68.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 68.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 67.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 67.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 67.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 67.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 67.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 66.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 66.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 66.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 66.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 66.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 65.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 65.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 65.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 65.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 64.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 64.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 64.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 64.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 63.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 63.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 62.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 62.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 62.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 62.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 62.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 61.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 61.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 61.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 60.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 60.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 60.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 59.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 59.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 57.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 57.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 57.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 56.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 56.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 54.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 51.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 51.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 51.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 49.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

269.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 269.0
FF:10181-103D1 60 years, female 300.6
FF:10159-103A6 76 years, female 237.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.8
Samples: 4

Max nTPM: 79.3
Min nTPM: 73.1
Sample A Female 74.9
Sample B Female 75.8
Sample C Male 79.3
Sample D Male 73.1
Ventral spinal cord
nTPM: 78.7
Samples: 4

Max nTPM: 81.1
Min nTPM: 74.4
Sample A Female 79.7
Sample B Female 79.4
Sample C Male 74.4
Sample D Male 81.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo