A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.5
nTPM
Monaco:
283.2
nTPM
Schmiedel:
54.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.5
HPA sample
nTPM
NK-cell nTPM: 42.5
Samples: 6
Max nTPM: 63.0
Min nTPM: 29.6
P10809_1013
39.3
P10809_1033
63.0
P10809_1052
29.6
P10809_1071
35.3
P10809_1093
34.2
P10809_1103
53.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
283.2
Monaco sample
nTPM
NK-cell nTPM: 283.2
Samples: 4
Max nTPM: 319.3
Min nTPM: 198.1
RHH5316_R3683
309.9
RHH5224_R3596
305.4
RHH5253_R3625
319.3
RHH5282_R3654
198.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.7
Schmiedel sample id
TPM
NK-cell TPM: 54.7
Samples: 90
Max TPM: 92.5
Min TPM: 23.8
NK_1
92.5
NK_2
88.0
NK_3
84.5
NK_4
84.2
NK_5
81.3
NK_6
80.2
NK_7
79.9
NK_8
78.5
NK_9
77.8
NK_10
77.7
NK_11
76.3
NK_12
75.6
NK_13
74.9
NK_14
73.6
NK_15
73.1
NK_16
72.2
NK_17
71.5
NK_18
71.0
NK_19
69.7
NK_20
68.7
NK_21
68.5
NK_22
67.8
NK_23
67.4
NK_24
67.3
NK_25
65.8
NK_26
65.6
NK_27
65.3
NK_28
64.0
NK_29
64.0
NK_30
63.9
NK_31
63.4
NK_32
61.9
NK_33
61.8
NK_34
60.7
NK_35
60.4
NK_36
58.8
NK_37
57.8
NK_38
57.7
NK_39
57.2
NK_40
56.5
NK_41
56.3
NK_42
55.4
NK_43
54.4
NK_44
53.8
NK_45
53.6
NK_46
51.4
NK_47
51.3
NK_48
51.2
NK_49
50.9
NK_50
50.2
NK_51
50.0
NK_52
48.9
NK_53
48.9
NK_54
48.9
NK_55
48.8
NK_56
48.7
NK_57
47.8
NK_58
47.3
NK_59
47.1
NK_60
46.5
NK_61
46.3
NK_62
46.0
NK_63
45.0
NK_64
44.5
NK_65
44.5
NK_66
44.3
NK_67
43.2
NK_68
43.1
NK_69
43.0
NK_70
42.9
NK_71
42.2
NK_72
41.0
NK_73
38.7
NK_74
38.7
NK_75
36.5
NK_76
35.4
NK_77
35.3
NK_78
35.0
NK_79
34.5
NK_80
34.5
NK_81
34.2
NK_82
33.7
NK_83
31.8
NK_84
31.2
NK_85
30.5
NK_86
28.1
NK_87
26.8
NK_88
26.2
NK_89
23.9
NK_90
23.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
