A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.8
nTPM
Monaco:
51.7
nTPM
Schmiedel:
29.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
HPA sample
nTPM
Classical monocyte nTPM: 15.7
Samples: 6
Max nTPM: 21.7
Min nTPM: 11.0
P10809_1003
21.7
P10809_1020
18.6
P10809_1039
13.5
P10809_1058
11.0
P10809_1080
17.1
P10809_1107
12.4
Intermediate monocyte nTPM: 15.8
Samples: 6
Max nTPM: 23.9
Min nTPM: 12.3
P10809_1004
23.9
P10809_1023
14.7
P10809_1042
12.3
P10809_1061
17.7
P10809_1081
12.4
P10809_1108
14.0
Non-classical monocyte nTPM: 13.8
Samples: 5
Max nTPM: 17.6
Min nTPM: 10.4
P10809_1005
17.6
P10809_1053
13.3
P10809_1072
15.2
P10809_1082
10.4
P10809_1109
12.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.7
Monaco sample
nTPM
Classical monocyte nTPM: 51.7
Samples: 4
Max nTPM: 56.6
Min nTPM: 48.7
RHH5313_R3680
52.0
RHH5221_R3593
48.7
RHH5250_R3622
49.6
RHH5279_R3651
56.6
Intermediate monocyte nTPM: 46.5
Samples: 4
Max nTPM: 66.9
Min nTPM: 34.0
RHH5314_R3681
40.4
RHH5222_R3594
66.9
RHH5251_R3623
34.0
RHH5280_R3652
44.6
Non-classical monocyte nTPM: 44.5
Samples: 4
Max nTPM: 59.7
Min nTPM: 33.0
RHH5315_R3682
47.6
RHH5223_R3595
59.7
RHH5252_R3624
33.0
RHH5281_R3653
37.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.4
Schmiedel sample id
TPM
Classical monocyte TPM: 29.4
Samples: 91
Max TPM: 39.3
Min TPM: 23.0
MONOCYTES_1
39.3
MONOCYTES_2
37.9
MONOCYTES_3
35.9
MONOCYTES_4
35.1
MONOCYTES_5
34.3
MONOCYTES_6
34.3
MONOCYTES_7
34.2
MONOCYTES_8
33.5
MONOCYTES_9
33.3
MONOCYTES_10
33.3
MONOCYTES_11
33.2
MONOCYTES_12
33.0
MONOCYTES_13
33.0
MONOCYTES_14
32.5
MONOCYTES_15
32.0
MONOCYTES_16
31.9
MONOCYTES_17
31.8
MONOCYTES_18
31.8
MONOCYTES_19
31.7
MONOCYTES_20
31.6
MONOCYTES_21
31.5
MONOCYTES_22
31.4
MONOCYTES_23
31.4
MONOCYTES_24
31.3
MONOCYTES_25
30.9
MONOCYTES_26
30.7
MONOCYTES_27
30.7
MONOCYTES_28
30.6
MONOCYTES_29
30.6
MONOCYTES_30
30.6
MONOCYTES_31
30.2
MONOCYTES_32
30.0
MONOCYTES_33
29.8
MONOCYTES_34
29.7
MONOCYTES_35
29.7
MONOCYTES_36
29.7
MONOCYTES_37
29.6
MONOCYTES_38
29.6
MONOCYTES_39
29.5
MONOCYTES_40
29.4
MONOCYTES_41
29.2
MONOCYTES_42
29.2
MONOCYTES_43
29.1
MONOCYTES_44
29.0
MONOCYTES_45
28.9
MONOCYTES_46
28.9
MONOCYTES_47
28.7
MONOCYTES_48
28.7
MONOCYTES_49
28.7
MONOCYTES_50
28.6
MONOCYTES_51
28.5
MONOCYTES_52
28.4
MONOCYTES_53
28.3
MONOCYTES_54
28.3
MONOCYTES_55
28.1
MONOCYTES_56
28.1
MONOCYTES_57
28.1
MONOCYTES_58
27.9
MONOCYTES_59
27.8
MONOCYTES_60
27.7
MONOCYTES_61
27.7
MONOCYTES_62
27.6
MONOCYTES_63
27.5
MONOCYTES_64
27.5
MONOCYTES_65
27.5
MONOCYTES_66
27.5
MONOCYTES_67
27.4
MONOCYTES_68
27.3
MONOCYTES_69
27.3
MONOCYTES_70
27.2
MONOCYTES_71
27.2
MONOCYTES_72
27.1
MONOCYTES_73
27.1
MONOCYTES_74
27.0
MONOCYTES_75
27.0
MONOCYTES_76
26.9
MONOCYTES_77
26.8
MONOCYTES_78
26.7
MONOCYTES_79
26.6
MONOCYTES_80
26.5
MONOCYTES_81
26.5
MONOCYTES_82
26.4
MONOCYTES_83
26.2
MONOCYTES_84
26.1
MONOCYTES_85
26.1
MONOCYTES_86
25.9
MONOCYTES_87
25.4
MONOCYTES_88
25.3
MONOCYTES_89
24.5
MONOCYTES_90
23.8
MONOCYTES_91
23.0
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Non-classical monocyte TPM: 24.0
Samples: 90
Max TPM: 29.5
Min TPM: 19.2
M2_1
29.5
M2_2
28.1
M2_3
28.1
M2_4
27.7
M2_5
27.4
M2_6
27.3
M2_7
27.3
M2_8
27.3
M2_9
27.0
M2_10
27.0
M2_11
26.7
M2_12
26.7
M2_13
26.4
M2_14
26.4
M2_15
26.2
M2_16
26.1
M2_17
25.8
M2_18
25.8
M2_19
25.7
M2_20
25.5
M2_21
25.4
M2_22
25.4
M2_23
25.4
M2_24
25.3
M2_25
25.3
M2_26
25.2
M2_27
25.2
M2_28
25.0
M2_29
25.0
M2_30
24.9
M2_31
24.9
M2_32
24.8
M2_33
24.8
M2_34
24.8
M2_35
24.6
M2_36
24.6
M2_37
24.5
M2_38
24.5
M2_39
24.2
M2_40
24.2
M2_41
24.2
M2_42
24.0
M2_43
23.9
M2_44
23.9
M2_45
23.7
M2_46
23.7
M2_47
23.7
M2_48
23.7
M2_49
23.7
M2_50
23.6
M2_51
23.6
M2_52
23.4
M2_53
23.4
M2_54
23.4
M2_55
23.3
M2_56
23.3
M2_57
23.2
M2_58
23.2
M2_59
23.1
M2_60
23.1
M2_61
23.0
M2_62
22.8
M2_63
22.8
M2_64
22.7
M2_65
22.7
M2_66
22.6
M2_67
22.6
M2_68
22.6
M2_69
22.5
M2_70
22.5
M2_71
22.4
M2_72
22.4
M2_73
22.3
M2_74
22.1
M2_75
22.0
M2_76
21.9
M2_77
21.8
M2_78
21.7
M2_79
21.7
M2_80
21.6
M2_81
21.5
M2_82
21.2
M2_83
21.1
M2_84
21.1
M2_85
21.0
M2_86
20.9
M2_87
20.8
M2_88
20.5
M2_89
20.0
M2_90
19.2
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