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  • GABARAPL1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:170.8 nTPM
HPA Brain:226.3 nTPM
GTEx:170.8 nTPM
FANTOM5:241.3 Scaled Tags Per Million
Pig:230.4 nTPM
Mouse:665.1 nTPM
Allen mouse:27.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.3
Sample id Sample description nTPM
Amygdala
nTPM: 202.1
2814 Male, age 76, right hemisphere 282.5
1987 Female, age 91, left hemisphere 212.5
2517 Female, age 94, left hemisphere 177.6
2695 Female, age 67, right hemisphere 169.7
2514 Male, age 75, right hemisphere 168.2
Basal amygdala
nTPM: 214.0
2243 Female, age 91, right hemisphere 277.1
2110 Male, age 80, left hemisphere 250.5
2685 Female, age 94, left hemisphere 216.5
1955 Male, age 76, both hemispheres 208.2
2609 Male, age 75, right hemisphere 181.7
2827 Female, age 67, right hemisphere 150.1
Central amygdala
nTPM: 226.3
1905 Male, age 76, both hemispheres 262.7
2826 Female, age 94, left hemisphere 246.5
2701 Female, age 91, right hemisphere 228.0
2239 Male, age 80, left hemisphere 216.5
2515 Male, age 75, right hemisphere 177.7
Corticomedial amygdala
nTPM: 205.3
2829 Male, age 80, left hemisphere 277.0
2242 Female, age 91, right hemisphere 269.2
2240 Male, age 76, both hemispheres 184.4
2535 Female, age 67, right hemisphere 181.5
2429 Female, age 94, left hemisphere 171.7
2428 Male, age 75, right hemisphere 148.2
Lateral amygdala
nTPM: 208.6
1883 Male, age 76, both hemispheres 281.4
2534 Female, age 94, left hemisphere 246.6
2255 Female, age 91, right hemisphere 224.3
2256 Male, age 80, left hemisphere 168.8
2516 Male, age 75, right hemisphere 168.4
2830 Female, age 67, right hemisphere 162.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 170.8
Samples: 181

Max nTPM: 500.1
Min nTPM: 67.7
Std nTPM: 82.0
Median nTPM: 142.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 500.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 460.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 426.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 396.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 379.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 364.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 361.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 341.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 336.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 329.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 323.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 315.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 309.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 308.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 301.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 294.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 292.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 289.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 279.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 278.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 275.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 275.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 273.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 263.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 258.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 255.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 253.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 252.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 250.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 248.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 242.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 242.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 239.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 237.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 236.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 235.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 233.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 233.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 226.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 223.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 218.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 216.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 214.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 214.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 213.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 213.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 212.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 210.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 208.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 208.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 207.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 204.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 204.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 203.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 200.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 199.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 198.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 195.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 193.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 190.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 189.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 188.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 188.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 188.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 188.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 186.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 182.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 182.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 179.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 173.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 173.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 168.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 166.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 165.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 163.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 163.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 162.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 161.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 156.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 154.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 154.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 152.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 150.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 148.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 148.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 147.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 145.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 144.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 142.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 140.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 139.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 138.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 138.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 138.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 137.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 137.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 136.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 135.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 135.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 134.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 133.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 133.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 132.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 132.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 131.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 129.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 127.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 126.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 125.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 125.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 124.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 122.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 122.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 121.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 121.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 120.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 119.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 119.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 119.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 118.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 118.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 118.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 116.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 116.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 114.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 112.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 112.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 112.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 111.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 110.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 109.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 108.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 108.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 107.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 107.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 107.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 105.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 104.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 103.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 101.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 100.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 100.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 100.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 99.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 99.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 97.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 96.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 96.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 94.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 94.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 93.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 93.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 93.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 93.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 92.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 91.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 89.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 88.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 87.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 86.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 86.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 85.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 85.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 84.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 82.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 82.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 78.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 78.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 75.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 67.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 241.3
FF:10151-102I7 76 years, female 241.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.4
Pig sample Sample description nTPM
Amygdala
nTPM: 230.4
Samples: 4

Max nTPM: 339.0
Min nTPM: 178.8
Sample A Female 339.0
Sample B Female 220.8
Sample C Male 178.8
Sample D Male 182.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

665.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 665.1
Samples: 4

Max nTPM: 711.4
Min nTPM: 621.3
Sample A Male 711.4
Sample B Male 688.6
Sample C Female 621.3
Sample D Female 639.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.3
71608204 Antisense, RP_050927_01_A12, Mouse strain C57BL/6J (56 days, male) 31.5
654925 Antisense, RP_040922_01_A11, Mouse strain C57BL/6J (56 days, male) 23.2

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