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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1649.9 nTPM
GTEx:1649.9 nTPM
FANTOM5:35.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041874Antibody HPA043317
Squamous epithelial cells HighHigh





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1649.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1649.9
Samples: 170

Max nTPM: 9656.9
Min nTPM: 0.0
Std nTPM: 1690.2
Median nTPM: 1322.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 9656.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 6974.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 6023.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 5914.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 5188.0
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 4974.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 4775.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 4629.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 4628.4
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 4504.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 4499.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 4443.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 4345.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 4337.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 4151.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 4120.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 4097.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 4011.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 3981.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 3780.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3738.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 3697.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3657.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 3599.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3585.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 3513.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3399.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 3347.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 3334.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 3292.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 3150.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2959.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2951.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2874.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2850.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2840.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2806.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2797.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2773.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2768.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2728.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2670.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 2658.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2616.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2580.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2467.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2412.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2395.8
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 2372.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2344.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2306.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2296.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2283.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2268.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2244.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2220.7
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2188.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2170.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2160.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2153.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2148.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2147.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2137.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2113.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2112.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2049.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2026.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1968.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1888.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 1878.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1804.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1797.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1762.5
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1677.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1620.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1598.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1566.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1551.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1509.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1482.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1468.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1393.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1379.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1336.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1329.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1315.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1305.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1304.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1259.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1254.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1250.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1238.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1205.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1136.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1132.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1096.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1088.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 895.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 812.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 726.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 718.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 697.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 682.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 618.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 586.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 585.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 519.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 420.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 400.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 358.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 344.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 343.3
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 333.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 281.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 272.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 213.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 172.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 168.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 156.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 133.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 129.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 126.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 124.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 107.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 98.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 96.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 86.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 76.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 43.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 39.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 33.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 32.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 29.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 27.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 24.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 16.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 14.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 8.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 8.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 7.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 7.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 6.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 6.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 4.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 4.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 3.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1.4
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 0.7
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 0.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 0.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 0.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 0.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 35.9
FF:10204-103F6 68 years, female 35.9

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