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  • NDUFB10
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:195.7 nTPM
HPA Brain:101.1 nTPM
GTEx:195.7 nTPM
FANTOM5:183.8 Scaled Tags Per Million
Pig:102.5 nTPM
Mouse:270.5 nTPM
Allen mouse:19.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.1
Sample id Sample description nTPM
Amygdala
nTPM: 101.1
2814 Male, age 76, right hemisphere 117.5
2695 Female, age 67, right hemisphere 105.6
2514 Male, age 75, right hemisphere 98.2
2517 Female, age 94, left hemisphere 92.8
1987 Female, age 91, left hemisphere 91.2
Basal amygdala
nTPM: 83.0
2609 Male, age 75, right hemisphere 96.8
2243 Female, age 91, right hemisphere 89.5
1955 Male, age 76, both hemispheres 86.9
2110 Male, age 80, left hemisphere 83.2
2685 Female, age 94, left hemisphere 78.8
2827 Female, age 67, right hemisphere 62.4
Central amygdala
nTPM: 86.3
1905 Male, age 76, both hemispheres 103.1
2826 Female, age 94, left hemisphere 102.3
2515 Male, age 75, right hemisphere 81.4
2239 Male, age 80, left hemisphere 78.2
2701 Female, age 91, right hemisphere 66.5
Corticomedial amygdala
nTPM: 83.4
2829 Male, age 80, left hemisphere 94.4
2242 Female, age 91, right hemisphere 91.1
2429 Female, age 94, left hemisphere 84.0
2428 Male, age 75, right hemisphere 81.3
2240 Male, age 76, both hemispheres 81.0
2535 Female, age 67, right hemisphere 68.7
Lateral amygdala
nTPM: 82.8
1883 Male, age 76, both hemispheres 105.4
2516 Male, age 75, right hemisphere 97.1
2534 Female, age 94, left hemisphere 91.1
2830 Female, age 67, right hemisphere 69.2
2255 Female, age 91, right hemisphere 68.5
2256 Male, age 80, left hemisphere 65.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 195.7
Samples: 181

Max nTPM: 540.8
Min nTPM: 101.5
Std nTPM: 58.3
Median nTPM: 186.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 540.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 508.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 397.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 354.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 338.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 327.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 314.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 302.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 285.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 276.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 276.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 274.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 273.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 272.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 270.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 267.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 263.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 259.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 256.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 254.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 247.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 243.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 242.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 241.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 240.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 240.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 239.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 235.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 232.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 232.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 229.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 228.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 228.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 228.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 227.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 226.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 225.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 225.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 224.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 224.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 220.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 220.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 219.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 216.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 214.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 212.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 212.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 212.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 212.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 211.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 210.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 210.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 210.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 209.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 209.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 209.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 209.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 208.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 208.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 206.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 205.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 205.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 205.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 204.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 202.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 201.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 201.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 200.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 199.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 198.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 198.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 197.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 196.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 196.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 196.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 195.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 195.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 195.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 193.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 192.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 191.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 191.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 190.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 189.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 189.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 188.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 188.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 188.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 187.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 186.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 186.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 186.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 185.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 184.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 183.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 182.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 181.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 181.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 180.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 179.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 179.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 178.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 178.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 177.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 177.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 177.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 176.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 176.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 176.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 175.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 175.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 175.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 174.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 173.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 173.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 173.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 172.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 172.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 171.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 171.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 171.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 168.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 167.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 167.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 166.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 166.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 166.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 165.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 164.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 164.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 164.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 164.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 162.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 162.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 161.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 159.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 155.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 155.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 155.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 155.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 154.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 154.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 154.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 153.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 152.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 152.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 152.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 151.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 151.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 149.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 148.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 147.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 147.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 146.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 146.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 144.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 144.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 143.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 143.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 140.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 138.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 138.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 136.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 136.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 135.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 131.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 130.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 130.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 128.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 127.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 126.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 121.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 119.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 119.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 113.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 101.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 183.8
FF:10151-102I7 76 years, female 183.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.5
Pig sample Sample description nTPM
Amygdala
nTPM: 102.6
Samples: 4

Max nTPM: 146.1
Min nTPM: 82.3
Sample A Female 146.1
Sample B Female 94.1
Sample C Male 82.3
Sample D Male 87.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 270.6
Samples: 4

Max nTPM: 288.2
Min nTPM: 255.7
Sample A Male 272.9
Sample B Male 255.7
Sample C Female 288.2
Sample D Female 265.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.2
71608213 Antisense, RP_050927_01_B09, Mouse strain C57BL/6J (56 days, male) 19.2

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