SCRN2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • SCRN2
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:11.7 nTPM
GTEx:22.9 nTPM
FANTOM5:8.5 Scaled Tags Per Million
Macaque:23.6 nTPM
Pig:11.8 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.7
Sample id Sample description nTPM
Putamen
nTPM: 11.7
2647 Male, age 75, left hemisphere 12.8
2466 Female, age 79, unknown 12.4
1838 Male, age 80, right hemisphere 12.3
2489 Female, age 72, unknown 11.6
1829 Male, age 74, unknown 11.2
1937 Female, age 91, right hemisphere 11.2
2482 Female, age 94, left hemisphere 10.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 22.9
Samples: 254

Max nTPM: 41.2
Min nTPM: 6.0
Std nTPM: 5.1
Median nTPM: 22.6
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 41.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 40.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 35.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 35.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 33.9
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 33.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 33.7
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 33.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 33.5
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 33.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 32.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 32.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 31.7
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 31.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 31.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 31.2
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 30.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 30.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 30.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 30.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 30.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 29.9
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 29.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 29.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 29.4
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 29.3
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 29.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 29.0
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 29.0
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 28.8
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 28.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 28.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 28.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 28.4
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 28.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 28.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 28.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 27.5
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 27.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 27.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 27.4
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 27.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 27.4
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 27.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 27.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 27.2
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 27.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 26.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 26.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 26.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 26.6
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 26.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 26.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 26.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 26.5
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 26.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 26.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 26.4
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 26.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 26.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 26.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 26.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 26.0
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 26.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 25.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 25.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 25.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 25.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 25.5
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 25.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 25.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 25.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 25.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 25.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 25.1
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 25.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 25.1
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 25.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 25.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 25.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 24.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 24.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 24.9
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 24.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 24.8
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 24.6
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 24.4
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 24.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 24.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 24.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 24.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 24.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 24.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 24.3
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 24.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 24.2
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 24.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 24.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 24.1
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 24.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 24.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 24.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 23.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 23.8
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 23.7
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 23.7
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 23.7
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 23.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 23.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 23.5
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 23.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 23.4
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 23.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 23.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 23.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 23.3
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 23.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 23.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 23.1
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 23.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 23.0
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 23.0
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 22.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 22.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 22.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 22.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 22.7
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 22.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 22.5
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 22.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 22.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 22.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 22.2
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 22.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 22.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 22.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 22.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 22.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 22.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 21.9
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 21.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 21.9
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 21.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 21.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 21.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 21.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 21.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 21.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 21.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 21.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 21.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 21.5
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 21.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 21.3
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 21.2
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 21.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 21.2
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 21.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 21.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 21.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 21.0
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 21.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 20.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 20.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 20.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 20.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 20.7
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 20.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 20.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 20.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 20.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 20.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 20.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 20.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 20.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 20.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 20.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 20.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 20.1
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 20.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 20.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 20.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 19.9
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 19.9
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 19.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 19.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 19.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 19.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 19.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 19.7
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 19.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 19.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 19.5
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 19.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 19.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 19.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 19.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 19.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 19.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 19.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 19.2
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 19.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 19.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 19.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 19.0
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 18.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 18.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 18.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 18.5
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 18.4
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 18.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 18.2
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 18.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 18.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 18.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 17.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 17.9
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 17.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 17.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 17.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 17.9
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 17.9
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 17.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 17.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 17.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 17.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 17.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 17.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 17.2
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 17.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 17.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 16.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 16.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 16.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 16.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 16.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 16.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 16.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 15.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 15.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 15.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 15.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 15.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 14.9
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 14.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 14.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 14.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 13.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 12.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 11.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 10.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 10.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 9.2
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 6.0
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 8.5
FF:10176-103C5 60 years, female 8.5

PUTAMEN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.6
Macaque sample Sample description nTPM
Putamen
nTPM: 23.6
Samples: 2

Max nTPM: 24.0
Min nTPM: 23.1
Sample A 23.1
Sample B 24.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.8
Pig sample Sample description nTPM
Putamen
nTPM: 11.8
Samples: 3

Max nTPM: 13.8
Min nTPM: 9.0
Sample B Female 9.0
Sample C Male 13.8
Sample D Male 12.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.