BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA Brain:53.7 nTPM
GTEx:38.3 nTPM
FANTOM5:108.2 Scaled Tags Per Million
Macaque:64.8 nTPM
Mouse:34.7 nTPM
Rat:28.5 nTPM
Pig:63.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.9
2666 Male, age 74, left hemisphere 58.5
2586 Male, age 75, left hemisphere 58.2
1870 Female, age 42, unknown 55.3
1827 Male, age 72, unknown 54.1
2411 Female, age 72, unknown 53.4
1833 Male, age 53, unknown 52.1
1830 Male, age 51, unknown 49.1
2019 Male, age 18, unknown 48.4
2219 Male, age 76, both hemispheres 45.9
2828 Female, age 72, unknown 44.1
Dorsal raphe nucleus
nTPM: 48.1
2750 Male, age 76, both hemispheres 50.5
2298 Female, age 72, unknown 48.6
2047 Male, age 72, unknown 48.4
1828 Male, age 53, unknown 47.0
2016 Female, age 72, unknown 45.9
Inferior colliculus
nTPM: 52.5
2097 Female, age 72, unknown 55.3
1890 Male, age 53, unknown 53.6
1848 Female, age 42, unknown 51.9
2849 Male, age 72, unknown 49.1
Median raphe nucleus
nTPM: 53.1
2220 Male, age 76, midline 53.1
Periaquaductal grey, anterior
nTPM: 52.2
2502 Female, age 75, unknown 56.7
1947 Male, age 18, unknown 51.4
1795 Male, age 51, unknown 48.5
Periaquaductal grey, dorsal
nTPM: 49.8
1840 Male, age 53, unknown 52.2
1831 Male, age 72, unknown 50.0
2850 Male, age 76, both hemispheres 49.0
2464 Female, age 72, unknown 48.1
Periaquaductal grey, lateral
nTPM: 44.2
2053 Male, age 18, unknown 49.0
2140 Male, age 76, both hemispheres 45.3
2272 Male, age 74, both hemispheres 38.3
Pretectal area
nTPM: 53.1
1816 Male, age 51, unknown 65.9
1944 Female, age 72, unknown 64.5
2007 Male, age 72, unknown 62.8
1817 Female, age 42, unknown 57.6
1815 Male, age 53, unknown 56.2
2825 Male, age 18, unknown 51.5
2224 Female, age 72, unknown 48.6
2407 Male, age 75, both hemispheres 48.4
2316 Male, age 76, right hemisphere 44.4
2667 Female, age 75, unknown 43.9
2273 Male, age 74, both hemispheres 40.7
Red nucleus
nTPM: 52.1
2588 Male, age 74, left hemisphere 56.7
2725 Female, age 75, unknown 56.6
1821 Female, age 72, unknown 55.9
2584 Male, age 75, left hemisphere 55.1
2503 Female, age 72, unknown 55.0
1904 Male, age 53, unknown 53.1
2785 Male, age 18, unknown 52.7
1865 Male, age 51, unknown 50.7
1954 Female, age 42, unknown 50.1
2227 Male, age 72, unknown 49.0
2769 Male, age 72, unknown 45.4
2823 Male, age 76, right hemisphere 45.3
Substantia nigra
nTPM: 53.7
1889 Female, age 72, unknown 58.8
2241 Male, age 72, unknown 58.0
2583 Male, age 75, right hemisphere 57.7
2409 Female, age 72, unknown 56.0
1941 Male, age 53, unknown 54.7
1851 Male, age 51, unknown 52.9
1916 Female, age 42, unknown 51.9
2665 Male, age 74, both hemispheres 51.7
2590 Female, age 75, unknown 48.1
2699 Male, age 18, unknown 47.6
Superior colliculus
nTPM: 53.6
2668 Female, age 75, unknown 60.1
2261 Male, age 18, unknown 58.8
2664 Male, age 75, both hemispheres 54.8
2087 Female, age 72, unknown 53.9
2587 Male, age 74, left hemisphere 53.6
1913 Female, age 42, unknown 51.9
1839 Male, age 51, unknown 51.8
1995 Male, age 72, unknown 50.7
1796 Male, age 53, unknown 50.2
1895 Male, age 76, right hemisphere 50.2
Ventral tegmental area
nTPM: 50.1
2410 Female, age 72, unknown 54.6
2223 Female, age 72, unknown 52.4
1915 Female, age 42, unknown 50.3
2218 Male, age 76, both hemispheres 49.9
1942 Male, age 51, unknown 48.4
2021 Male, age 53, unknown 45.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.3
Samples: 183

Max nTPM: 68.8
Min nTPM: 21.0
Std nTPM: 6.8
Median nTPM: 37.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 68.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 64.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 54.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 52.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 52.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 52.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 52.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 51.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 51.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 108.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.2
FF:10158-103A5 76 years, female 108.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 64.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 64.8
Samples: 1

Max nTPM: 64.8
Min nTPM: 64.8
Sample A 64.8
Midbrain
nTPM: 58.9
Samples: 1

Max nTPM: 58.9
Min nTPM: 58.9
Sample A 58.9
Superior colliculi
nTPM: 59.4
Samples: 1

Max nTPM: 59.4
Min nTPM: 59.4
Sample A 59.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.2
Samples: 3

Max nTPM: 69.9
Min nTPM: 50.5
Sample A Female 66.3
Sample B Female 50.5
Sample C Male 69.9
Midbrain
nTPM: 63.8
Samples: 3

Max nTPM: 64.4
Min nTPM: 63.3
Sample B Female 63.7
Sample C Male 63.3
Sample D Male 64.4
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 55.8
Min nTPM: 50.2
Sample B Female 54.3
Sample C Male 55.8
Sample D Male 50.2
Superior colliculi
nTPM: 53.6
Samples: 4

Max nTPM: 60.6
Min nTPM: 38.8
Sample A Female 59.2
Sample B Female 38.8
Sample C Male 60.6
Sample D Male 55.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 36.5
Min nTPM: 33.6
Sample A 33.6
Sample B 34.3
Sample C 34.2
Sample D 36.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 28.5
Rat sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 29.3
Min nTPM: 27.8
Sample A 27.8
Sample A 28.4
Sample A 29.3
Sample A 28.3

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