A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.4
nTPM
Monaco:
80.6
nTPM
Schmiedel:
43.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.4
HPA sample
nTPM
Memory B-cell nTPM: 5.0
Samples: 6
Max nTPM: 8.7
Min nTPM: 0.1
P10809_1017
8.7
P10809_1025
5.4
P10809_1044
0.1
P10809_1063
4.9
P10809_1092
7.8
P10809_1105
3.3
Naive B-cell nTPM: 5.4
Samples: 6
Max nTPM: 9.0
Min nTPM: 0.0
P10809_1011
8.1
P10809_1029
9.0
P10809_1048
0.0
P10809_1067
4.0
P10809_1091
6.8
P10809_1104
4.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 67.3
Samples: 4
Max nTPM: 78.2
Min nTPM: 62.5
RHH5310_R3677
65.6
RHH5218_R3590
62.5
RHH5247_R3619
63.0
RHH5276_R3648
78.2
Naive B-cell nTPM: 80.6
Samples: 4
Max nTPM: 96.1
Min nTPM: 71.3
RHH5308_R3675
78.1
RHH5216_R3588
76.9
RHH5245_R3617
96.1
RHH5274_R3646
71.3
Non-switched memory B-cell nTPM: 57.0
Samples: 4
Max nTPM: 65.8
Min nTPM: 51.5
RHH5309_R3676
65.8
RHH5217_R3589
51.5
RHH5246_R3618
55.8
RHH5275_R3647
55.0
Plasmablast nTPM: 61.3
Samples: 4
Max nTPM: 75.8
Min nTPM: 51.9
RHH5312_R3679
75.8
RHH5220_R3592
58.6
RHH5249_R3621
51.9
RHH5278_R3650
58.7
Switched memory B-cell nTPM: 54.3
Samples: 4
Max nTPM: 71.8
Min nTPM: 40.8
RHH5311_R3678
40.8
RHH5219_R3591
44.4
RHH5248_R3620
71.8
RHH5277_R3649
60.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.4
Schmiedel sample id
TPM
Naive B-cell TPM: 43.4
Samples: 91
Max TPM: 69.0
Min TPM: 23.1
B_CELL_NAIVE_1
69.0
B_CELL_NAIVE_2
66.7
B_CELL_NAIVE_3
66.6
B_CELL_NAIVE_4
64.3
B_CELL_NAIVE_5
62.1
B_CELL_NAIVE_6
61.1
B_CELL_NAIVE_7
61.0
B_CELL_NAIVE_8
60.3
B_CELL_NAIVE_9
59.8
B_CELL_NAIVE_10
58.7
B_CELL_NAIVE_11
55.6
B_CELL_NAIVE_12
52.6
B_CELL_NAIVE_13
51.7
B_CELL_NAIVE_14
50.5
B_CELL_NAIVE_15
49.6
B_CELL_NAIVE_16
49.4
B_CELL_NAIVE_17
49.3
B_CELL_NAIVE_18
49.3
B_CELL_NAIVE_19
49.2
B_CELL_NAIVE_20
48.8
B_CELL_NAIVE_21
48.6
B_CELL_NAIVE_22
48.4
B_CELL_NAIVE_23
48.0
B_CELL_NAIVE_24
47.8
B_CELL_NAIVE_25
47.7
B_CELL_NAIVE_26
47.6
B_CELL_NAIVE_27
47.4
B_CELL_NAIVE_28
47.0
B_CELL_NAIVE_29
46.8
B_CELL_NAIVE_30
46.6
B_CELL_NAIVE_31
46.4
B_CELL_NAIVE_32
46.2
B_CELL_NAIVE_33
46.2
B_CELL_NAIVE_34
46.0
B_CELL_NAIVE_35
45.3
B_CELL_NAIVE_36
44.9
B_CELL_NAIVE_37
44.8
B_CELL_NAIVE_38
44.7
B_CELL_NAIVE_39
44.7
B_CELL_NAIVE_40
44.6
B_CELL_NAIVE_41
44.5
B_CELL_NAIVE_42
44.4
B_CELL_NAIVE_43
44.0
B_CELL_NAIVE_44
43.7
B_CELL_NAIVE_45
43.2
B_CELL_NAIVE_46
43.1
B_CELL_NAIVE_47
43.1
B_CELL_NAIVE_48
43.0
B_CELL_NAIVE_49
42.3
B_CELL_NAIVE_50
42.1
B_CELL_NAIVE_51
41.5
B_CELL_NAIVE_52
41.5
B_CELL_NAIVE_53
40.9
B_CELL_NAIVE_54
40.6
B_CELL_NAIVE_55
40.4
B_CELL_NAIVE_56
39.7
B_CELL_NAIVE_57
39.7
B_CELL_NAIVE_58
39.4
B_CELL_NAIVE_59
38.9
B_CELL_NAIVE_60
38.8
B_CELL_NAIVE_61
38.6
B_CELL_NAIVE_62
38.6
B_CELL_NAIVE_63
38.0
B_CELL_NAIVE_64
37.8
B_CELL_NAIVE_65
37.4
B_CELL_NAIVE_66
37.4
B_CELL_NAIVE_67
37.2
B_CELL_NAIVE_68
36.9
B_CELL_NAIVE_69
36.8
B_CELL_NAIVE_70
36.5
B_CELL_NAIVE_71
36.3
B_CELL_NAIVE_72
36.1
B_CELL_NAIVE_73
36.1
B_CELL_NAIVE_74
36.0
B_CELL_NAIVE_75
34.7
B_CELL_NAIVE_76
34.6
B_CELL_NAIVE_77
34.1
B_CELL_NAIVE_78
34.1
B_CELL_NAIVE_79
34.0
B_CELL_NAIVE_80
33.3
B_CELL_NAIVE_81
32.8
B_CELL_NAIVE_82
32.8
B_CELL_NAIVE_83
32.6
B_CELL_NAIVE_84
32.5
B_CELL_NAIVE_85
30.2
B_CELL_NAIVE_86
29.2
B_CELL_NAIVE_87
27.6
B_CELL_NAIVE_88
27.5
B_CELL_NAIVE_89
27.1
B_CELL_NAIVE_90
25.4
B_CELL_NAIVE_91
23.1
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