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  • TTYH2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:113.1 nTPM
HPA Brain:133.2 nTPM
GTEx:113.1 nTPM
FANTOM5:200.4 Scaled Tags Per Million
Pig:225.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.3
2194 Female, age 79, both hemispheres 138.3
1981 Female, age 72, midline 132.9
2816 Male, age 47, midline 121.5
2048 Male, age 55, midline 110.1
2565 Male, age 75, midline 88.6
Cervical spinal cord, dorsal horn
nTPM: 133.2
2296 Male, age 66, both hemispheres 208.1
2173 Female, age 72, unknown 177.1
2069 Male, age 47, both hemispheres 137.5
1877 Male, age 55, unknown 112.8
2297 Male, age 75, both hemispheres 81.8
2721 Male, age 90, both hemispheres 81.7
Cervical spinal cord, ventral horn
nTPM: 131.5
2068 Male, age 55, unknown 169.5
2820 Female, age 79, both hemispheres 159.6
2480 Male, age 75, both hemispheres 119.7
2098 Female, age 72, unknown 119.3
2809 Male, age 90, both hemispheres 112.9
2295 Male, age 66, both hemispheres 108.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 113.1
Samples: 204

Max nTPM: 263.2
Min nTPM: 24.3
Std nTPM: 44.1
Median nTPM: 106.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 263.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 252.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 244.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 243.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 223.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 220.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 213.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 213.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 211.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 200.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 196.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 192.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 187.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 185.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 181.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 175.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 168.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 167.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 167.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 165.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 164.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 159.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 159.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 158.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 158.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 157.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 155.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 155.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 155.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 154.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 154.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 153.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 153.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 153.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 152.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 151.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 151.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 150.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 150.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 149.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 149.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 148.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 148.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 147.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 147.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 145.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 144.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 143.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 143.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 142.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 141.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 141.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 140.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 140.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 139.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 138.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 137.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 136.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 135.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 135.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 133.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 133.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 132.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 131.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 130.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 130.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 129.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 128.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 128.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 128.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 126.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 125.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 124.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 124.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 124.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 120.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 120.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 119.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 119.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 118.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 118.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 118.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 117.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 117.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 117.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 116.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 116.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 116.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 115.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 113.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 112.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 112.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 111.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 111.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 111.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 111.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 108.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 107.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 107.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 106.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 106.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 106.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 104.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 104.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 104.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 104.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 103.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 103.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 103.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 103.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 102.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 102.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 102.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 101.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 101.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 100.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 100.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 99.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 99.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 98.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 98.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 98.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 97.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 96.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 96.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 96.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 95.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 94.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 94.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 93.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 93.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 92.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 92.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 91.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 91.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 91.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 90.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 90.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 90.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 89.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 89.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 87.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 85.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 84.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 84.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 83.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 82.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 82.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 81.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 81.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 80.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 80.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 79.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 78.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 78.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 77.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 77.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 76.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 75.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 75.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 74.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 73.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 72.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 72.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 71.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 71.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 70.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 70.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 70.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 69.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 67.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 66.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 66.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 65.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 65.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 65.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 65.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 65.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 65.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 63.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 62.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 54.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 53.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 52.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 52.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 51.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 51.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 51.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 51.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 50.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 48.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 48.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 44.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 43.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 42.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 42.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 33.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 27.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 24.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 200.4
FF:10181-103D1 60 years, female 245.6
FF:10159-103A6 76 years, female 155.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 206.1
Samples: 4

Max nTPM: 282.5
Min nTPM: 122.9
Sample A Female 282.5
Sample B Female 203.8
Sample C Male 122.9
Sample D Male 215.3
Ventral spinal cord
nTPM: 225.1
Samples: 4

Max nTPM: 304.5
Min nTPM: 171.9
Sample A Female 304.5
Sample B Female 206.0
Sample C Male 171.9
Sample D Male 218.0

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